RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 MSRB2Q9Y3D2 182 aa4.65□□□□□ -1.67
CD44-229ENST00000528672 VAMP4O75379 141 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 CCNFP41002 786 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 PMS1P54277 932 aaKnown RBP4.64□□□□□ -1.67
CD44-229ENST00000528672 ANAPC15P60006 121 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 CYP4F3Q08477 520 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 PPP2R5DQ14738 602 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 NKPD1Q17RQ9 610 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 SFRP5Q5T4F7 317 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 NFXL1Q6ZNB6 911 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 CBLL1Q75N03 491 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 SPACA3Q8IXA5 215 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 CCDC144CPQ8IYA2 1237 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 MFSD4AQ8N468 514 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 PPP1R14AQ96A00 147 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 HAUS7Q99871 368 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 MKRN2Q9H000 416 aaKnown RBP4.64□□□□□ -1.67
CD44-229ENST00000528672 CCDC113Q9H0I3 377 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 SLKQ9H2G2 1235 aaPredicted RBP4.64□□□□□ -1.67
CD44-229ENST00000528672 PAK6Q9NQU5 681 aaPredicted RBP4.64□□□□□ -1.67
CD44-229ENST00000528672 GFOD1Q9NXC2 390 aa4.64□□□□□ -1.67
CD44-229ENST00000528672 BLACEA4D250 179 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 PPP1R12AO14974 1030 aaPredicted RBP4.63□□□□□ -1.67
CD44-229ENST00000528672 SUSD5O60279 629 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 CLEC3AO75596 197 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 FAM153BP0C7A2 387 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 IMPDH2P12268 514 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 FUT4P22083 530 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 CTSKP43235 329 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 ZNF445P59923 1031 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 SLC7A5Q01650 507 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 IFRD2Q12894 506 aaPredicted RBP4.63□□□□□ -1.67
CD44-229ENST00000528672 BNIP3Q12983 259 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 SQSTM1Q13501 440 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 PRSS53Q2L4Q9 553 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 LRRFIP1Q32MZ4 808 aaKnown RBP4.63□□□□□ -1.67
CD44-229ENST00000528672 ANGEL2Q5VTE6 544 aaKnown RBP4.63□□□□□ -1.67
CD44-229ENST00000528672 FILIP1Q7Z7B0 1213 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 WFDC3Q8IUB2 231 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 FLCNQ8NFG4 579 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 OR6P1Q8NGX9 317 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 SH3TC2Q8TF17 1288 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 BRINP2Q9C0B6 783 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 LMCD1Q9NZU5 365 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 NOP58Q9Y2X3 529 aaKnown RBP4.63□□□□□ -1.67
CD44-229ENST00000528672 CAPN6Q9Y6Q1 641 aa4.63□□□□□ -1.67
CD44-229ENST00000528672 H0Y8X5 98 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 ARNTLO00327 626 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 RAB11FIP3O75154 756 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 CDC45O75419 566 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 PRAMEF1O95521 474 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 L1CAMP32004 1257 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 AUHQ13825 339 aaKnown RBP4.62□□□□□ -1.67
CD44-229ENST00000528672 CBX2Q14781 532 aaPredicted RBP4.62□□□□□ -1.67
CD44-229ENST00000528672 NBPF9Q3BBW0 867 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 SLC10A6Q3KNW5 377 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 PLEKHG4Q58EX7 1191 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 INTS3Q68E01 1043 aaKnown RBP4.62□□□□□ -1.67
CD44-229ENST00000528672 ZNF574Q6ZN55 896 aaPredicted RBP4.62□□□□□ -1.67
CD44-229ENST00000528672 DTWD2Q8NBA8 298 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 RNF141Q8WVD5 230 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 APPBP2Q92624 585 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 HSPA12BQ96MM6 686 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 ASPNQ9BXN1 380 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 KLHL25Q9H0H3 589 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 FANCLQ9NW38 375 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 IFT57Q9NWB7 429 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 ZMYM5Q9UJ78 669 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 PITPNM2Q9BZ72 1349 aa4.62□□□□□ -1.67
CD44-229ENST00000528672 ESYT3A0FGR9 886 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 H3BS24 57 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 PDPK1O15530 556 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 DNAJC6O75061 913 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 ITGAVP06756 1048 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 JUNBP17275 347 aaPredicted RBP4.61□□□□□ -1.67
CD44-229ENST00000528672 FXNQ16595 210 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 DPY19L1Q2PZI1 675 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 TKFCQ3LXA3 575 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 SV2CQ496J9 727 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 OGFOD2Q6N063 350 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 SLC23A3Q6PIS1 610 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 CRTC3Q6UUV7 619 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 HOMER1Q86YM7 354 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 TP53INP2Q8IXH6 220 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 ABI1Q8IZP0 508 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 TAB3Q8N5C8 712 aaPredicted RBP4.61□□□□□ -1.67
CD44-229ENST00000528672 C19orf47Q8N9M1 422 aaKnown RBP4.61□□□□□ -1.67
CD44-229ENST00000528672 CCDC120Q96HB5 630 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 ZDHHC15Q96MV8 337 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 DUSP15Q9H1R2 295 aaPredicted RBP4.61□□□□□ -1.67
CD44-229ENST00000528672 NOL6Q9H6R4 1146 aaKnown RBP4.61□□□□□ -1.67
CD44-229ENST00000528672 SPC25Q9HBM1 224 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 CWC22Q9HCG8 908 aaKnown RBP4.61□□□□□ -1.67
CD44-229ENST00000528672 GP6Q9HCN6 339 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 PRDM7Q9NQW5 492 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 FBXL21Q9UKT6 434 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 PRKAB1Q9Y478 270 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 COL4A3BPQ9Y5P4 624 aa4.61□□□□□ -1.67
CD44-229ENST00000528672 A0A1W2PQU0 124 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 FAM155AB1AL88 458 aaPredicted RBP4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms