RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CCDC116Q8IYX3 515 aa8.75□□□□□ -1.01
CD44-228ENST00000528455 OSBPL5Q9H0X9 879 aaPredicted RBP8.75□□□□□ -1.01
CD44-228ENST00000528455 RNF41Q9H4P4 317 aaPredicted RBP8.75□□□□□ -1.01
CD44-228ENST00000528455 ZNF408Q9H9D4 720 aa8.75□□□□□ -1.01
CD44-228ENST00000528455 ZNF287Q9HBT7 754 aa8.75□□□□□ -1.01
CD44-228ENST00000528455 EPB41L4AQ9HCS5 686 aaPredicted RBP8.75□□□□□ -1.01
CD44-228ENST00000528455 PI4KBQ9UBF8 816 aa8.75□□□□□ -1.01
CD44-228ENST00000528455 PCDHAC2Q9Y5I4 1007 aa8.75□□□□□ -1.01
CD44-228ENST00000528455 SNX14Q9Y5W7 946 aa8.75□□□□□ -1.01
CD44-228ENST00000528455 BAZ2AQ9UIF9 1905 aaKnown RBP8.75□□□□□ -1.01
CD44-228ENST00000528455 MINDY4BA8MYZ0 360 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 E7EWF7 191 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 MAP2K1Q02750 393 aaPredicted RBP8.74□□□□□ -1.01
CD44-228ENST00000528455 MAP3K10Q02779 954 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 PDE4BQ07343 736 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 PPARAQ07869 468 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 TRDNQ13061 729 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 AKNAD1Q5T1N1 836 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 PPP1R26Q5T8A7 1209 aaPredicted RBP8.74□□□□□ -1.01
CD44-228ENST00000528455 MFSD6Q6ZSS7 791 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 SAPCD2Q86UD0 394 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 MAPKAPK5Q8IW41 473 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 HPS1Q92902 700 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 HHIPL1Q96JK4 782 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 NEK1Q96PY6 1258 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 KIF2CQ99661 725 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 KLF16Q9BXK1 252 aaPredicted RBP8.74□□□□□ -1.01
CD44-228ENST00000528455 ALDH8A1Q9H2A2 487 aaPredicted RBP8.74□□□□□ -1.01
CD44-228ENST00000528455 CNNM2Q9H8M5 875 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 PALD1Q9ULE6 856 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 FLT1P17948 1338 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 PITPNM2Q9BZ72 1349 aa8.74□□□□□ -1.01
CD44-228ENST00000528455 COL2A1P02458 1487 aaPredicted RBP8.73□□□□□ -1.01
CD44-228ENST00000528455 FAM187AA6NFU0 413 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 HLA-DOAP06340 250 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 PLCD1P51178 756 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 DHX9Q08211 1270 aaKnown RBP8.73□□□□□ -1.01
CD44-228ENST00000528455 NFIAQ12857 509 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 GRM1Q13255 1194 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 PICALMQ13492 652 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 RABEP1Q15276 862 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 COL13A1Q5TAT6 717 aaPredicted RBP8.73□□□□□ -1.01
CD44-228ENST00000528455 ANGEL2Q5VTE6 544 aaKnown RBP8.73□□□□□ -1.01
CD44-228ENST00000528455 CYP4F22Q6NT55 531 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 DHX32Q7L7V1 743 aaKnown RBP8.73□□□□□ -1.01
CD44-228ENST00000528455 APOBEC3FQ8IUX4 373 aaKnown RBP8.73□□□□□ -1.01
CD44-228ENST00000528455 ZFPM1Q8IX07 1006 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 FBXL16Q8N461 479 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 CCDC82Q8N4S0 544 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 C2orf69Q8N8R5 385 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 PLPP7Q8NBV4 271 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 NCOA7Q8NI08 942 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 STAG1Q8WVM7 1258 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 HOOK2Q96ED9 719 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 CAPNS2Q96L46 248 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 MTA3Q9BTC8 594 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 PPP1R12CQ9BZL4 782 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 KRT23Q9C075 422 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 EHD4Q9H223 541 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 DDX4Q9NQI0 724 aaKnown RBP8.73□□□□□ -1.01
CD44-228ENST00000528455 TMPRSS4Q9NRS4 437 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 GGA3Q9NZ52 723 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 TFIP11Q9UBB9 837 aaKnown RBP8.73□□□□□ -1.01
CD44-228ENST00000528455 SWAP70Q9UH65 585 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 PPP2R3BQ9Y5P8 575 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 ATRNL1Q5VV63 1379 aa8.73□□□□□ -1.01
CD44-228ENST00000528455 CLRN2A0PK11 232 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 PALM3A6NDB9 673 aaPredicted RBP8.72□□□□□ -1.01
CD44-228ENST00000528455 TCP10L2B9ZVM9 353 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 ORC4O43929 436 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 SKIP12755 728 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 MAP2K2P36507 400 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 CACNB3P54284 484 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 HAND2P61296 217 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 EXOSC10Q01780 885 aaKnown RBP8.72□□□□□ -1.01
CD44-228ENST00000528455 GABPAQ06546 454 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 TCP10Q12799 353 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 RASA3Q14644 834 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 LAPTM4AQ15012 233 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 TRAF7Q6Q0C0 670 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 RUFY3Q7L099 469 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 ZSCAN29Q8IWY8 852 aaPredicted RBP8.72□□□□□ -1.01
CD44-228ENST00000528455 ZNF444Q8N0Y2 327 aaPredicted RBP8.72□□□□□ -1.01
CD44-228ENST00000528455 TMTC2Q8N394 836 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 CCDC17Q96LX7 622 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 IRX2Q9BZI1 471 aaPredicted RBP8.72□□□□□ -1.01
CD44-228ENST00000528455 DEFB129Q9H1M3 183 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 MKNK2Q9HBH9 465 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 ZSWIM5Q9P217 1185 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 HERC5Q9UII4 1024 aaKnown RBP8.72□□□□□ -1.01
CD44-228ENST00000528455 SERPINB13Q9UIV8 391 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 RBM19Q9Y4C8 960 aaKnown RBP8.72□□□□□ -1.01
CD44-228ENST00000528455 PCDHB11Q9Y5F2 797 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 CYP46A1Q9Y6A2 500 aa8.72□□□□□ -1.01
CD44-228ENST00000528455 DDTLA6NHG4 134 aaPredicted RBP8.71□□□□□ -1.02
CD44-228ENST00000528455 ADM5C9JUS6 153 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 FOXN1O15353 648 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 ATP9BO43861 1147 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 AVPP01185 164 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 MCM5P33992 734 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms