RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TMOD2Q9NZR1 351 aa23.68■■□□□ 1.38
VPS28-209ENST00000528142 SEC63Q9UGP8 760 aaKnown RBP23.68■■□□□ 1.38
VPS28-209ENST00000528142 SPDYE2Q495Y8 402 aa23.67■■□□□ 1.38
VPS28-209ENST00000528142 C11orf57Q6ZUT1 292 aaPredicted RBP23.67■■□□□ 1.38
VPS28-209ENST00000528142 ELOA2Q8IYF1 753 aaPredicted RBP23.67■■□□□ 1.38
VPS28-209ENST00000528142 RASGRP4Q8TDF6 673 aa23.67■■□□□ 1.38
VPS28-209ENST00000528142 CCDC12Q8WUD4 166 aaPredicted RBP23.67■■□□□ 1.38
VPS28-209ENST00000528142 FERMT2Q96AC1 680 aa23.67■■□□□ 1.38
VPS28-209ENST00000528142 GPCPD1Q9NPB8 672 aa23.67■■□□□ 1.38
VPS28-209ENST00000528142 ANO10Q9NW15 660 aa23.67■■□□□ 1.38
VPS28-209ENST00000528142 UTRNP46939 3433 aa23.67■■□□□ 1.38
VPS28-209ENST00000528142 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.66■■□□□ 1.38
VPS28-209ENST00000528142 AP5Z1O43299 807 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 EEF2P13639 858 aaKnown RBP23.66■■□□□ 1.38
VPS28-209ENST00000528142 LONRF3Q496Y0 759 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 KRBA2Q6ZNG9 492 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 TMEM179Q6ZVK1 233 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 LTBP3Q9NS15 1303 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 CLRN2A0PK11 232 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 TCP10L2B9ZVM9 353 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 hCG_1984214I3L0E3 225 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 NAPAP54920 295 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 ATP2B2Q01814 1243 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 PTGDRQ13258 359 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 GPATCH4Q5T3I0 446 aaKnown RBP23.66■■□□□ 1.38
VPS28-209ENST00000528142 ZNF713Q8N859 430 aaPredicted RBP23.66■■□□□ 1.38
VPS28-209ENST00000528142 FAM151AQ8WW52 585 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 CSRNP1Q96S65 589 aa23.66■■□□□ 1.38
VPS28-209ENST00000528142 A0A087WWV3 80 aa23.65■■□□□ 1.38
VPS28-209ENST00000528142 ESYT2A0FGR8 921 aa23.65■■□□□ 1.38
VPS28-209ENST00000528142 ADCY5O95622 1261 aa23.65■■□□□ 1.38
VPS28-209ENST00000528142 SEPT2Q15019 361 aa23.65■■□□□ 1.38
VPS28-209ENST00000528142 IQCB1Q15051 598 aa23.65■■□□□ 1.38
VPS28-209ENST00000528142 ZBED3Q96IU2 234 aaPredicted RBP23.65■■□□□ 1.38
VPS28-209ENST00000528142 CNTNAP1P78357 1384 aa23.65■■□□□ 1.38
VPS28-209ENST00000528142 CCDC194A0A1B0GVG4 234 aa23.64■■□□□ 1.38
VPS28-209ENST00000528142 SMCO2A6NFE2 343 aa23.64■■□□□ 1.38
VPS28-209ENST00000528142 JAG1P78504 1218 aa23.64■■□□□ 1.38
VPS28-209ENST00000528142 RRP1BQ14684 758 aaKnown RBP23.64■■□□□ 1.38
VPS28-209ENST00000528142 ABCB5Q2M3G0 1257 aa23.64■■□□□ 1.38
VPS28-209ENST00000528142 HS1BP3Q53T59 392 aa23.64■■□□□ 1.38
VPS28-209ENST00000528142 FKBP1CQ5VVH2 108 aa23.64■■□□□ 1.38
VPS28-209ENST00000528142 TTBK2Q6IQ55 1244 aa23.64■■□□□ 1.38
VPS28-209ENST00000528142 USP49Q70CQ1 688 aa23.64■■□□□ 1.38
VPS28-209ENST00000528142 JMJD4Q9H9V9 463 aa23.64■■□□□ 1.38
VPS28-209ENST00000528142 HERC5Q9UII4 1024 aaKnown RBP23.64■■□□□ 1.38
VPS28-209ENST00000528142 TUBE1Q9UJT0 475 aa23.64■■□□□ 1.38
VPS28-209ENST00000528142 CIAPIN1Q6FI81 312 aa23.63■■□□□ 1.37
VPS28-209ENST00000528142 ADGRF4Q8IZF3 695 aa23.63■■□□□ 1.37
VPS28-209ENST00000528142 C4orf32Q8N8J7 132 aa23.63■■□□□ 1.37
VPS28-209ENST00000528142 C6orf50Q9HD87 102 aa23.63■■□□□ 1.37
VPS28-209ENST00000528142 GDF11O95390 407 aa23.63■■□□□ 1.37
VPS28-209ENST00000528142 GNA11P29992 359 aa23.63■■□□□ 1.37
VPS28-209ENST00000528142 MCM7P33993 719 aa23.63■■□□□ 1.37
VPS28-209ENST00000528142 MDM2Q00987 491 aaPredicted RBP23.63■■□□□ 1.37
VPS28-209ENST00000528142 CNNM3Q8NE01 707 aa23.63■■□□□ 1.37
VPS28-209ENST00000528142 JDP2Q8WYK2 163 aa23.63■■□□□ 1.37
VPS28-209ENST00000528142 MTMR8Q96EF0 704 aa23.63■■□□□ 1.37
VPS28-209ENST00000528142 ICA1Q05084 483 aa23.62■■□□□ 1.37
VPS28-209ENST00000528142 PNMA6FA0A0J9YX94 578 aa23.61■■□□□ 1.37
VPS28-209ENST00000528142 POLR2DO15514 142 aaKnown RBP23.61■■□□□ 1.37
VPS28-209ENST00000528142 CCDC96Q2M329 555 aa23.61■■□□□ 1.37
VPS28-209ENST00000528142 FAM43AQ8N2R8 423 aa23.61■■□□□ 1.37
VPS28-209ENST00000528142 DCAF4Q8WV16 495 aa23.61■■□□□ 1.37
VPS28-209ENST00000528142 YBX3P16989 372 aaKnown RBP eCLIP23.61■■□□□ 1.371e-7■□□□□ 9.8
VPS28-209ENST00000528142 IL17AQ16552 155 aa23.61■■□□□ 1.37
VPS28-209ENST00000528142 RBM26Q5T8P6 1007 aaKnown RBP23.61■■□□□ 1.37
VPS28-209ENST00000528142 ARL6IP4Q66PJ3 421 aaKnown RBP23.61■■□□□ 1.37
VPS28-209ENST00000528142 KCTD1Q719H9 257 aa23.61■■□□□ 1.37
VPS28-209ENST00000528142 KRT25Q7Z3Z0 450 aa23.61■■□□□ 1.37
VPS28-209ENST00000528142 EPSTI1Q96J88 318 aa23.61■■□□□ 1.37
VPS28-209ENST00000528142 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.61■■□□□ 1.37
VPS28-209ENST00000528142 GH2P01242 217 aa23.6■■□□□ 1.37
VPS28-209ENST00000528142 NLRP12P59046 1061 aa23.6■■□□□ 1.37
VPS28-209ENST00000528142 PNOCQ13519 176 aa23.6■■□□□ 1.37
VPS28-209ENST00000528142 INF2Q27J81 1249 aa23.6■■□□□ 1.37
VPS28-209ENST00000528142 SLFN13Q68D06 897 aa23.6■■□□□ 1.37
VPS28-209ENST00000528142 CEP57L1Q8IYX8 460 aa23.6■■□□□ 1.37
VPS28-209ENST00000528142 SERTAD1Q9UHV2 236 aa23.6■■□□□ 1.37
VPS28-209ENST00000528142 ACTN4O43707 911 aaKnown RBP23.59■■□□□ 1.37
VPS28-209ENST00000528142 PPP1R11O60927 126 aaPredicted RBP23.59■■□□□ 1.37
VPS28-209ENST00000528142 SLC16A2P36021 539 aa23.59■■□□□ 1.37
VPS28-209ENST00000528142 DPCR1Q3MIW9 517 aa23.59■■□□□ 1.37
VPS28-209ENST00000528142 FAM83AQ86UY5 434 aa23.59■■□□□ 1.37
VPS28-209ENST00000528142 DHX40Q8IX18 779 aaKnown RBP23.59■■□□□ 1.37
VPS28-209ENST00000528142 GMCL1P1Q8NEA9 526 aa23.59■■□□□ 1.37
VPS28-209ENST00000528142 SYMPKQ92797 1274 aaKnown RBP23.59■■□□□ 1.37
VPS28-209ENST00000528142 COA7Q96BR5 231 aa23.59■■□□□ 1.37
VPS28-209ENST00000528142 A0A087X0B3 334 aa23.59■■□□□ 1.37
VPS28-209ENST00000528142 VWA3AA6NCI4 1184 aa23.59■■□□□ 1.37
VPS28-209ENST00000528142 USP17L10C9JJH3 530 aa23.59■■□□□ 1.37
VPS28-209ENST00000528142 SLC1A4P43007 532 aa23.59■■□□□ 1.37
VPS28-209ENST00000528142 TNIP1Q15025 636 aa23.59■■□□□ 1.37
VPS28-209ENST00000528142 VEZTQ9HBM0 779 aa23.59■■□□□ 1.37
VPS28-209ENST00000528142 PGAP2Q9UHJ9 254 aa23.59■■□□□ 1.37
VPS28-209ENST00000528142 BIN1O00499 593 aa23.58■■□□□ 1.37
VPS28-209ENST00000528142 WNT10BO00744 389 aa23.58■■□□□ 1.37
VPS28-209ENST00000528142 ZBTB5O15062 677 aa23.58■■□□□ 1.37
VPS28-209ENST00000528142 FOXN1O15353 648 aa23.58■■□□□ 1.37
VPS28-209ENST00000528142 PLCB2Q00722 1185 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms