RNA–Protein interactions for RNA: ENST00000527027.1

PTPRU-210, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 3

Gene PTPRU, Length 619 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-210ENST00000527027 SNRNP48Q6IEG0 339 aaKnown RBP19.3■□□□□ 0.68
PTPRU-210ENST00000527027 MAMDC4Q6UXC1 1216 aa19.3■□□□□ 0.68
PTPRU-210ENST00000527027 ANKRD33Q7Z3H0 272 aa19.3■□□□□ 0.68
PTPRU-210ENST00000527027 PRPF38AQ8NAV1 312 aaKnown RBP19.3■□□□□ 0.68
PTPRU-210ENST00000527027 NUP133Q8WUM0 1156 aa19.3■□□□□ 0.68
PTPRU-210ENST00000527027 LENG1Q96BZ8 264 aaPredicted RBP19.3■□□□□ 0.68
PTPRU-210ENST00000527027 DDX11Q96FC9 970 aa19.3■□□□□ 0.68
PTPRU-210ENST00000527027 NUP88Q99567 741 aaPredicted RBP19.3■□□□□ 0.68
PTPRU-210ENST00000527027 MKNK2Q9HBH9 465 aa19.3■□□□□ 0.68
PTPRU-210ENST00000527027 STARD7Q9NQZ5 370 aa19.3■□□□□ 0.68
PTPRU-210ENST00000527027 NYAP2Q9P242 653 aa19.3■□□□□ 0.68
PTPRU-210ENST00000527027 BAZ2AQ9UIF9 1905 aaKnown RBP19.29■□□□□ 0.68
PTPRU-210ENST00000527027 SYNGAP1Q96PV0 1343 aa19.29■□□□□ 0.68
PTPRU-210ENST00000527027 TMEM265A0A087WTH1 108 aa19.29■□□□□ 0.68
PTPRU-210ENST00000527027 DCDC2CA8MYV0 355 aa19.29■□□□□ 0.68
PTPRU-210ENST00000527027 SNAI1O95863 264 aaPredicted RBP19.29■□□□□ 0.68
PTPRU-210ENST00000527027 RASA1P20936 1047 aa19.29■□□□□ 0.68
PTPRU-210ENST00000527027 FPGSQ05932 587 aa19.29■□□□□ 0.68
PTPRU-210ENST00000527027 FAAP100Q0VG06 881 aa19.29■□□□□ 0.68
PTPRU-210ENST00000527027 GIMAP6Q6P9H5 292 aa19.29■□□□□ 0.68
PTPRU-210ENST00000527027 KLHDC9Q8NEP7 349 aa19.29■□□□□ 0.68
PTPRU-210ENST00000527027 LRRCC1Q9C099 1032 aa19.29■□□□□ 0.68
PTPRU-210ENST00000527027 RIPK3Q9Y572 518 aa19.29■□□□□ 0.68
PTPRU-210ENST00000527027 DNAJC25-GNG10A0A024R161 153 aa19.28■□□□□ 0.68
PTPRU-210ENST00000527027 MOXD2PA6NHM9 499 aa19.28■□□□□ 0.68
PTPRU-210ENST00000527027 GSG1L2A8MUP6 293 aa19.28■□□□□ 0.68
PTPRU-210ENST00000527027 ZBED4O75132 1171 aa19.28■□□□□ 0.68
PTPRU-210ENST00000527027 KCNA10Q16322 511 aa19.28■□□□□ 0.68
PTPRU-210ENST00000527027 SYNRGQ9UMZ2 1314 aa19.27■□□□□ 0.68
PTPRU-210ENST00000527027 MYH8P13535 1937 aa19.27■□□□□ 0.68
PTPRU-210ENST00000527027 MINDY4BA8MYZ0 360 aa19.27■□□□□ 0.68
PTPRU-210ENST00000527027 ATP2A1O14983 1001 aa19.27■□□□□ 0.68
PTPRU-210ENST00000527027 DUSP11O75319 330 aaKnown RBP19.27■□□□□ 0.68
PTPRU-210ENST00000527027 NDUFB10O96000 172 aa19.27■□□□□ 0.68
PTPRU-210ENST00000527027 FOSL2P15408 326 aa19.27■□□□□ 0.68
PTPRU-210ENST00000527027 CCSAPQ6IQ19 270 aaPredicted RBP19.27■□□□□ 0.68
PTPRU-210ENST00000527027 ZNF467Q7Z7K2 595 aaPredicted RBP19.27■□□□□ 0.68
PTPRU-210ENST00000527027 STK11IPQ8N1F8 1099 aa19.27■□□□□ 0.68
PTPRU-210ENST00000527027 CLIP2Q9UDT6 1046 aa19.27■□□□□ 0.68
PTPRU-210ENST00000527027 ZHX1Q9UKY1 873 aaPredicted RBP19.27■□□□□ 0.68
PTPRU-210ENST00000527027 PARP14Q460N5 1801 aa19.27■□□□□ 0.68
PTPRU-210ENST00000527027 COL11A1P12107 1806 aaPredicted RBP19.26■□□□□ 0.67
PTPRU-210ENST00000527027 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.26■□□□□ 0.67
PTPRU-210ENST00000527027 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.26■□□□□ 0.67
PTPRU-210ENST00000527027 SMARCA5O60264 1052 aaPredicted RBP19.26■□□□□ 0.67
PTPRU-210ENST00000527027 SLC4A3P48751 1232 aa19.26■□□□□ 0.67
PTPRU-210ENST00000527027 ACVR2BQ13705 512 aa19.26■□□□□ 0.67
PTPRU-210ENST00000527027 CPXCR1Q8N123 301 aa19.26■□□□□ 0.67
PTPRU-210ENST00000527027 ECHDC1Q9NTX5 307 aa19.26■□□□□ 0.67
PTPRU-210ENST00000527027 CTDP1Q9Y5B0 961 aaPredicted RBP19.26■□□□□ 0.67
PTPRU-210ENST00000527027 CDH23Q9H251 3354 aa19.26■□□□□ 0.67
PTPRU-210ENST00000527027 ELP1O95163 1332 aa19.25■□□□□ 0.67
PTPRU-210ENST00000527027 IGKV6D-41A0A0C4DH26 115 aa19.25■□□□□ 0.67
PTPRU-210ENST00000527027 TIMP1P01033 207 aa19.25■□□□□ 0.67
PTPRU-210ENST00000527027 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.25■□□□□ 0.67
PTPRU-210ENST00000527027 ZNF444Q8N0Y2 327 aaPredicted RBP19.25■□□□□ 0.67
PTPRU-210ENST00000527027 KBTBD3Q8NAB2 608 aa19.25■□□□□ 0.67
PTPRU-210ENST00000527027 OSBP2Q969R2 916 aa19.25■□□□□ 0.67
PTPRU-210ENST00000527027 MKL1Q969V6 931 aa19.25■□□□□ 0.67
PTPRU-210ENST00000527027 GLT1D1Q96MS3 346 aa19.25■□□□□ 0.67
PTPRU-210ENST00000527027 CST5P28325 142 aaPredicted RBP19.24■□□□□ 0.67
PTPRU-210ENST00000527027 ANKRD35Q8N283 1001 aa19.24■□□□□ 0.67
PTPRU-210ENST00000527027 PCSK9Q8NBP7 692 aaKnown RBP19.24■□□□□ 0.67
PTPRU-210ENST00000527027 APPBP2Q92624 585 aa19.24■□□□□ 0.67
PTPRU-210ENST00000527027 KIFC2Q96AC6 838 aa19.24■□□□□ 0.67
PTPRU-210ENST00000527027 ABHD16BQ9H3Z7 469 aa19.24■□□□□ 0.67
PTPRU-210ENST00000527027 SPC25Q9HBM1 224 aa19.24■□□□□ 0.67
PTPRU-210ENST00000527027 SLC38A10Q9HBR0 1119 aa19.24■□□□□ 0.67
PTPRU-210ENST00000527027 ZNF287Q9HBT7 754 aa19.24■□□□□ 0.67
PTPRU-210ENST00000527027 RAVER2Q9HCJ3 691 aaKnown RBP19.24■□□□□ 0.67
PTPRU-210ENST00000527027 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.24■□□□□ 0.67
PTPRU-210ENST00000527027 FBXO40Q9UH90 709 aa19.24■□□□□ 0.67
PTPRU-210ENST00000527027 TBX21Q9UL17 535 aa19.24■□□□□ 0.67
PTPRU-210ENST00000527027 MYADML2A6NDP7 307 aa19.23■□□□□ 0.67
PTPRU-210ENST00000527027 C6orf222P0C671 652 aaPredicted RBP19.23■□□□□ 0.67
PTPRU-210ENST00000527027 DNAJB2P25686 324 aa19.23■□□□□ 0.67
PTPRU-210ENST00000527027 CDK7P50613 346 aa19.23■□□□□ 0.67
PTPRU-210ENST00000527027 MFSD5Q6N075 450 aa19.23■□□□□ 0.67
PTPRU-210ENST00000527027 CHST13Q8NET6 341 aa19.23■□□□□ 0.67
PTPRU-210ENST00000527027 MTMR4Q9NYA4 1195 aa19.23■□□□□ 0.67
PTPRU-210ENST00000527027 FEM1BQ9UK73 627 aa19.23■□□□□ 0.67
PTPRU-210ENST00000527027 SYNPO2Q9UMS6 1093 aa19.23■□□□□ 0.67
PTPRU-210ENST00000527027 SPTBN5Q9NRC6 3674 aaKnown RBP19.23■□□□□ 0.67
PTPRU-210ENST00000527027 MROH7Q68CQ1 1323 aa19.23■□□□□ 0.67
PTPRU-210ENST00000527027 PLXNA1Q9UIW2 1896 aa19.22■□□□□ 0.67
PTPRU-210ENST00000527027 RNF113AO15541 343 aaKnown RBP19.22■□□□□ 0.67
PTPRU-210ENST00000527027 ASGR1P07306 291 aa19.22■□□□□ 0.67
PTPRU-210ENST00000527027 GNAT2P19087 354 aa19.22■□□□□ 0.67
PTPRU-210ENST00000527027 OAZ1P54368 228 aa19.22■□□□□ 0.67
PTPRU-210ENST00000527027 GJA9P57773 515 aa19.22■□□□□ 0.67
PTPRU-210ENST00000527027 IRX5P78411 483 aaPredicted RBP19.22■□□□□ 0.67
PTPRU-210ENST00000527027 GRIN2CQ14957 1233 aa19.22■□□□□ 0.67
PTPRU-210ENST00000527027 CCDC144BQ3MJ40 725 aa19.22■□□□□ 0.67
PTPRU-210ENST00000527027 VTI1AQ96AJ9 217 aa19.22■□□□□ 0.67
PTPRU-210ENST00000527027 CEP95Q96GE4 821 aa19.22■□□□□ 0.67
PTPRU-210ENST00000527027 FGD4Q96M96 766 aa19.22■□□□□ 0.67
PTPRU-210ENST00000527027 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.22■□□□□ 0.67
PTPRU-210ENST00000527027 UPF3AQ9H1J1 476 aaKnown RBP19.22■□□□□ 0.67
PTPRU-210ENST00000527027 TTC28Q96AY4 2481 aa19.22■□□□□ 0.67
PTPRU-210ENST00000527027 PRDM1O75626 825 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms