RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ADMP35318 185 aa6.55□□□□□ -1.36
CD44-220ENST00000525688 MASP1P48740 699 aa6.55□□□□□ -1.36
CD44-220ENST00000525688 SNW1Q13573 536 aaKnown RBP6.55□□□□□ -1.36
CD44-220ENST00000525688 FNDC3BQ53EP0 1204 aaKnown RBP6.55□□□□□ -1.36
CD44-220ENST00000525688 FAM209AQ5JX71 171 aa6.55□□□□□ -1.36
CD44-220ENST00000525688 DTWD2Q8NBA8 298 aa6.55□□□□□ -1.36
CD44-220ENST00000525688 PIWIL2Q8TC59 973 aaKnown RBP6.55□□□□□ -1.36
CD44-220ENST00000525688 ENOX1Q8TC92 643 aaKnown RBP6.55□□□□□ -1.36
CD44-220ENST00000525688 OSBP2Q969R2 916 aa6.55□□□□□ -1.36
CD44-220ENST00000525688 CCDC140Q96MF4 163 aa6.55□□□□□ -1.36
CD44-220ENST00000525688 HEXIM2Q96MH2 286 aaKnown RBP6.55□□□□□ -1.36
CD44-220ENST00000525688 TBC1D32Q96NH3 1257 aa6.55□□□□□ -1.36
CD44-220ENST00000525688 IPO9Q96P70 1041 aaKnown RBP6.55□□□□□ -1.36
CD44-220ENST00000525688 LGR4Q9BXB1 951 aa6.55□□□□□ -1.36
CD44-220ENST00000525688 C7orf69Q9H7B7 122 aa6.55□□□□□ -1.36
CD44-220ENST00000525688 NCOA5Q9HCD5 579 aaKnown RBP6.55□□□□□ -1.36
CD44-220ENST00000525688 ARID4BQ4LE39 1312 aaPredicted RBP6.54□□□□□ -1.36
CD44-220ENST00000525688 HMX2A2RU54 273 aa6.54□□□□□ -1.36
CD44-220ENST00000525688 TBX1O43435 398 aa6.54□□□□□ -1.36
CD44-220ENST00000525688 KCNQ2O43526 872 aa6.54□□□□□ -1.36
CD44-220ENST00000525688 SIGLEC6O43699 453 aa6.54□□□□□ -1.36
CD44-220ENST00000525688 VIL1P09327 827 aaKnown RBP6.54□□□□□ -1.36
CD44-220ENST00000525688 GRIA2P42262 883 aa6.54□□□□□ -1.36
CD44-220ENST00000525688 SUMO1P63165 101 aaKnown RBP6.54□□□□□ -1.36
CD44-220ENST00000525688 CYP27A1Q02318 531 aa6.54□□□□□ -1.36
CD44-220ENST00000525688 CYP27C1Q4G0S4 372 aa6.54□□□□□ -1.36
CD44-220ENST00000525688 NSMFQ6X4W1 530 aa6.54□□□□□ -1.36
CD44-220ENST00000525688 FIBCD1Q8N539 461 aa6.54□□□□□ -1.36
CD44-220ENST00000525688 ADCY4Q8NFM4 1077 aa6.54□□□□□ -1.36
CD44-220ENST00000525688 MRPL4Q9BYD3 311 aaKnown RBP6.54□□□□□ -1.36
CD44-220ENST00000525688 NOL6Q9H6R4 1146 aaKnown RBP6.54□□□□□ -1.36
CD44-220ENST00000525688 STOML1Q9UBI4 398 aa6.54□□□□□ -1.36
CD44-220ENST00000525688 NOP58Q9Y2X3 529 aaKnown RBP6.54□□□□□ -1.36
CD44-220ENST00000525688 SF3B6Q9Y3B4 125 aaKnown RBP6.54□□□□□ -1.36
CD44-220ENST00000525688 PRODHO43272 600 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 SCG5P05408 212 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 IBSPP21815 317 aaPredicted RBP6.53□□□□□ -1.36
CD44-220ENST00000525688 HOXC12P31275 282 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 GATA4P43694 442 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 MAP4K2Q12851 820 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 PABPC4Q13310 644 aaKnown RBP eCLIP6.53□□□□□ -1.36
CD44-220ENST00000525688 TM4SF20Q53R12 229 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 TRIM61Q5EBN2 209 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 TMC3Q7Z5M5 1100 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 BRF1Q92994 677 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 NKX2-4Q9H2Z4 354 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 PCDH12Q9NPG4 1184 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 GFOD1Q9NXC2 390 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 COL4A3BPQ9Y5P4 624 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 CAPN6Q9Y6Q1 641 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 CECR2Q9BXF3 1484 aa6.53□□□□□ -1.36
CD44-220ENST00000525688 DLX3O60479 287 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 KCNH1O95259 989 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 CBX7O95931 251 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 SRFP11831 508 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 NMIQ13287 307 aaPredicted RBP6.52□□□□□ -1.37
CD44-220ENST00000525688 CBX2Q14781 532 aaPredicted RBP6.52□□□□□ -1.37
CD44-220ENST00000525688 RNF43Q68DV7 783 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 GTF2IRD2BQ6EKJ0 949 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 PRR23CQ6ZRP0 262 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 KRT26Q7Z3Y9 468 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 GTF2IRD2Q86UP8 949 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 NIM1KQ8IY84 436 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 DAGLBQ8NCG7 672 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 BTN2A2Q8WVV5 523 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 TP53INP1Q96A56 240 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 MFSD3Q96ES6 412 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 IER2Q9BTL4 223 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 GPR62Q9BZJ7 368 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 ASCC2Q9H1I8 757 aaPredicted RBP6.52□□□□□ -1.37
CD44-220ENST00000525688 MKNK2Q9HBH9 465 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 CYP26B1Q9NR63 512 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 CHST7Q9NS84 486 aa6.52□□□□□ -1.37
CD44-220ENST00000525688 BCCIPQ9P287 314 aaKnown RBP eCLIP6.52□□□□□ -1.37
CD44-220ENST00000525688 hCG_2014768A0A024R1R8 64 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 PRR33A8MZF0 331 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 PRAMEF1O95521 474 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 GSNP06396 782 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 C6orf222P0C671 652 aaPredicted RBP6.51□□□□□ -1.37
CD44-220ENST00000525688 GFRA1P56159 465 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 IGBP1P78318 339 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 TNK2Q07912 1038 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 PPP2R5DQ14738 602 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 MFSD4AQ8N468 514 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 CLUHP3Q96NS8 147 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 PSMD1Q99460 953 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 DSCC1Q9BVC3 393 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 HDAC8Q9BY41 377 aa6.51□□□□□ -1.37
CD44-220ENST00000525688 INTS7Q9NVH2 962 aaKnown RBP6.51□□□□□ -1.37
CD44-220ENST00000525688 SHISA3A0PJX4 238 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 GNAT3A8MTJ3 354 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 RBAK-RBAKDNI3L0D1 243 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 RAPGEF3O95398 923 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 CPP00450 1065 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 ITIH2P19823 946 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 CTSKP43235 329 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 AMPD3Q01432 767 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 AMPD2Q01433 879 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 POU4F1Q01851 419 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 DUSP27Q5VZP5 1158 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms