RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 KIF22Q14807 665 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 PARP10Q53GL7 1025 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 GPAT2Q6NUI2 795 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 AGBL3Q8NEM8 1001 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 GRAPLQ8TC17 118 aaPredicted RBP6.09□□□□□ -1.43
CD44-218ENST00000525469 FAM122AQ96E09 287 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 SLC30A3Q99726 388 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 UTP14AQ9BVJ6 771 aaKnown RBP6.09□□□□□ -1.43
CD44-218ENST00000525469 UBE2OQ9C0C9 1292 aaKnown RBP6.09□□□□□ -1.43
CD44-218ENST00000525469 PRO3102Q9H379 93 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 UPF2Q9HAU5 1272 aaKnown RBP6.09□□□□□ -1.43
CD44-218ENST00000525469 MYOZ2Q9NPC6 264 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 FAM13BQ9NYF5 915 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 KLF15Q9UIH9 416 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 ZMIZ1Q9ULJ6 1067 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 ANGEL1Q9UNK9 670 aaKnown RBP6.09□□□□□ -1.43
CD44-218ENST00000525469 SCAF8Q9UPN6 1271 aaKnown RBP6.09□□□□□ -1.43
CD44-218ENST00000525469 PTCH2Q9Y6C5 1203 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 HTTP42858 3142 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 ZNF646O15015 1829 aaPredicted RBP6.09□□□□□ -1.44
CD44-218ENST00000525469 PSME4Q14997 1843 aa6.09□□□□□ -1.44
CD44-218ENST00000525469 PRMT3O60678 531 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 NTSR2O95665 410 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 ZBTB48P10074 688 aaPredicted RBP6.08□□□□□ -1.44
CD44-218ENST00000525469 IRX3P78415 501 aaPredicted RBP6.08□□□□□ -1.44
CD44-218ENST00000525469 LINC00114Q6XXX2 140 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 KIAA1211Q6ZU35 1233 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 Q7L0L9 218 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 CENPQQ7L2Z9 268 aaPredicted RBP6.08□□□□□ -1.44
CD44-218ENST00000525469 ZSCAN30Q86W11 494 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 SH3TC2Q8TF17 1288 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 STK32AQ8WU08 396 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 RTF1Q92541 710 aaKnown RBP6.08□□□□□ -1.44
CD44-218ENST00000525469 ZC3H12CQ9C0D7 883 aaKnown RBP6.08□□□□□ -1.44
CD44-218ENST00000525469 GZF1Q9H116 711 aaPredicted RBP6.08□□□□□ -1.44
CD44-218ENST00000525469 YY1AP1Q9H869 796 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 KCNQ5Q9NR82 932 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 MTMR10Q9NXD2 777 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 KLK14Q9P0G3 267 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 STAP2Q9UGK3 403 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 HCN2Q9UL51 889 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 RRP7AQ9Y3A4 280 aaKnown RBP6.08□□□□□ -1.44
CD44-218ENST00000525469 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.08□□□□□ -1.44
CD44-218ENST00000525469 LAMB4A4D0S4 1761 aa6.08□□□□□ -1.44
CD44-218ENST00000525469 UBN2Q6ZU65 1347 aa6.07□□□□□ -1.44
CD44-218ENST00000525469 E9PSI1 815 aa6.07□□□□□ -1.44
CD44-218ENST00000525469 IGF2BP3O00425 579 aaKnown RBP eCLIP6.07□□□□□ -1.44
CD44-218ENST00000525469 MSTNO14793 375 aa6.07□□□□□ -1.44
CD44-218ENST00000525469 DIAPH1O60610 1272 aaKnown RBP6.07□□□□□ -1.44
CD44-218ENST00000525469 ZNF280AP59817 542 aaPredicted RBP6.07□□□□□ -1.44
CD44-218ENST00000525469 TBC1D8BQ0IIM8 1120 aa6.07□□□□□ -1.44
CD44-218ENST00000525469 FKBP5Q13451 457 aaPredicted RBP6.07□□□□□ -1.44
CD44-218ENST00000525469 PRRT3Q5FWE3 981 aa6.07□□□□□ -1.44
CD44-218ENST00000525469 SLC10A5Q5PT55 438 aa6.07□□□□□ -1.44
CD44-218ENST00000525469 DNTTIP2Q5QJE6 756 aaKnown RBP6.07□□□□□ -1.44
CD44-218ENST00000525469 C16orf46Q6P387 395 aa6.07□□□□□ -1.44
CD44-218ENST00000525469 RAB44Q7Z6P3 723 aaPredicted RBP6.07□□□□□ -1.44
CD44-218ENST00000525469 FOXD4L4Q8WXT5 416 aaPredicted RBP6.07□□□□□ -1.44
CD44-218ENST00000525469 CLP1Q92989 425 aaKnown RBP6.07□□□□□ -1.44
CD44-218ENST00000525469 IFT43Q96FT9 208 aa6.07□□□□□ -1.44
CD44-218ENST00000525469 PRIMPOLQ96LW4 560 aa6.07□□□□□ -1.44
CD44-218ENST00000525469 CHMP4AQ9BY43 222 aa6.07□□□□□ -1.44
CD44-218ENST00000525469 MRS2Q9HD23 443 aa6.07□□□□□ -1.44
CD44-218ENST00000525469 CXXC1Q9P0U4 656 aaPredicted RBP6.07□□□□□ -1.44
CD44-218ENST00000525469 BIN2Q9UBW5 565 aaPredicted RBP6.07□□□□□ -1.44
CD44-218ENST00000525469 LAMB1P07942 1786 aa6.07□□□□□ -1.44
CD44-218ENST00000525469 RTL9Q8NET4 1388 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 UNC80Q8N2C7 3258 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 U2SURPO15042 1029 aaKnown RBP6.06□□□□□ -1.44
CD44-218ENST00000525469 FRAT2O75474 233 aaPredicted RBP6.06□□□□□ -1.44
CD44-218ENST00000525469 MICAL2O94851 1124 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 SPATA31C1P0DKV0 1188 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 HCLS1P14317 486 aaPredicted RBP6.06□□□□□ -1.44
CD44-218ENST00000525469 MYL6BP14649 208 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 INPP5BP32019 993 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 PLA2G5P39877 138 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 PLA2G4EQ3MJ16 856 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 CTR9Q6PD62 1173 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 ZNF34Q8IZ26 560 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 PDCL2Q8N4E4 241 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 CEP120Q8N960 986 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.06□□□□□ -1.44
CD44-218ENST00000525469 WNK4Q96J92 1243 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 PRKRIP1Q9H875 184 aaPredicted RBP6.06□□□□□ -1.44
CD44-218ENST00000525469 ZFYVE28Q9HCC9 887 aa6.06□□□□□ -1.44
CD44-218ENST00000525469 DMGDHQ9UI17 866 aaKnown RBP6.06□□□□□ -1.44
CD44-218ENST00000525469 RANBP2P49792 3224 aaKnown RBP6.06□□□□□ -1.44
CD44-218ENST00000525469 LRRC37AA6NMS7 1700 aa6.05□□□□□ -1.44
CD44-218ENST00000525469 RPTORQ8N122 1335 aa6.05□□□□□ -1.44
CD44-218ENST00000525469 M0R082 166 aa6.05□□□□□ -1.44
CD44-218ENST00000525469 LILRB5O75023 590 aa6.05□□□□□ -1.44
CD44-218ENST00000525469 FARP2O94887 1054 aaPredicted RBP6.05□□□□□ -1.44
CD44-218ENST00000525469 MAP3K6O95382 1288 aa6.05□□□□□ -1.44
CD44-218ENST00000525469 XRCC6P12956 609 aaKnown RBP eCLIP6.05□□□□□ -1.44
CD44-218ENST00000525469 HOXB4P17483 251 aaPredicted RBP6.05□□□□□ -1.44
CD44-218ENST00000525469 NFKB1P19838 968 aa6.05□□□□□ -1.44
CD44-218ENST00000525469 GJA8P48165 433 aa6.05□□□□□ -1.44
CD44-218ENST00000525469 PRMT2P55345 433 aa6.05□□□□□ -1.44
CD44-218ENST00000525469 RRP1P56182 461 aaKnown RBP6.05□□□□□ -1.44
CD44-218ENST00000525469 TAF1CQ15572 869 aaPredicted RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms