RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 SLFNL1Q499Z3 407 aa14.07□□□□□ -0.16
SDCBP-211ENST00000523441 FAM83BQ5T0W9 1011 aa14.07□□□□□ -0.16
SDCBP-211ENST00000523441 AKNAD1Q5T1N1 836 aa14.07□□□□□ -0.16
SDCBP-211ENST00000523441 OTOP2Q7RTS6 562 aa14.07□□□□□ -0.16
SDCBP-211ENST00000523441 AACSQ86V21 672 aa14.07□□□□□ -0.16
SDCBP-211ENST00000523441 RIOX2Q8IUF8 465 aa14.07□□□□□ -0.16
SDCBP-211ENST00000523441 SIAH1Q8IUQ4 282 aa14.07□□□□□ -0.16
SDCBP-211ENST00000523441 LCORLQ8N3X6 602 aa14.07□□□□□ -0.16
SDCBP-211ENST00000523441 TOX2Q96NM4 488 aa14.07□□□□□ -0.16
SDCBP-211ENST00000523441 DNAJC2Q99543 621 aaKnown RBP14.07□□□□□ -0.16
SDCBP-211ENST00000523441 NUP88Q99567 741 aaPredicted RBP14.07□□□□□ -0.16
SDCBP-211ENST00000523441 TSPYL2Q9H2G4 693 aaPredicted RBP14.07□□□□□ -0.16
SDCBP-211ENST00000523441 SH2D4AQ9H788 454 aa14.07□□□□□ -0.16
SDCBP-211ENST00000523441 YBX2Q9Y2T7 364 aaKnown RBP14.07□□□□□ -0.16
SDCBP-211ENST00000523441 ZNF532Q9HCE3 1301 aa14.07□□□□□ -0.16
SDCBP-211ENST00000523441 REV3LO60673 3130 aa14.07□□□□□ -0.16
SDCBP-211ENST00000523441 WDR46O15213 610 aaKnown RBP14.06□□□□□ -0.16
SDCBP-211ENST00000523441 PRKAB2O43741 272 aa14.06□□□□□ -0.16
SDCBP-211ENST00000523441 EEF2P13639 858 aaKnown RBP14.06□□□□□ -0.16
SDCBP-211ENST00000523441 MYOGP15173 224 aa14.06□□□□□ -0.16
SDCBP-211ENST00000523441 PDE6AP16499 860 aa14.06□□□□□ -0.16
SDCBP-211ENST00000523441 KCNQ1P51787 676 aa14.06□□□□□ -0.16
SDCBP-211ENST00000523441 ATP8B2P98198 1209 aa14.06□□□□□ -0.16
SDCBP-211ENST00000523441 BEX3Q00994 111 aa14.06□□□□□ -0.16
SDCBP-211ENST00000523441 PSRC1Q6PGN9 363 aaPredicted RBP14.06□□□□□ -0.16
SDCBP-211ENST00000523441 NOL8Q76FK4 1167 aaKnown RBP14.06□□□□□ -0.16
SDCBP-211ENST00000523441 CPXCR1Q8N123 301 aa14.06□□□□□ -0.16
SDCBP-211ENST00000523441 TSEN34Q9BSV6 310 aaKnown RBP14.06□□□□□ -0.16
SDCBP-211ENST00000523441 CERS4Q9HA82 394 aa14.06□□□□□ -0.16
SDCBP-211ENST00000523441 DCP1AQ9NPI6 582 aaPredicted RBP14.06□□□□□ -0.16
SDCBP-211ENST00000523441 NRBP1Q9UHY1 535 aa14.06□□□□□ -0.16
SDCBP-211ENST00000523441 TMX2Q9Y320 296 aa14.06□□□□□ -0.16
SDCBP-211ENST00000523441 ZNF316A6NFI3 1004 aaPredicted RBP14.05□□□□□ -0.16
SDCBP-211ENST00000523441 MOXD2PA6NHM9 499 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 ZBBXA8MT70 800 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 GOLIM4O00461 696 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 VWA5AO00534 786 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 TLR3O15455 904 aaKnown RBP14.05□□□□□ -0.16
SDCBP-211ENST00000523441 ADCY6O43306 1168 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 SNAI1O95863 264 aaPredicted RBP14.05□□□□□ -0.16
SDCBP-211ENST00000523441 CCL23P55773 120 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 RAB30Q15771 203 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 GNASQ5JWF2 1037 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 PPP2R2DQ66LE6 453 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 SNRNP48Q6IEG0 339 aaKnown RBP14.05□□□□□ -0.16
SDCBP-211ENST00000523441 KLHDC9Q8NEP7 349 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 SSH3Q8TE77 659 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 IL1RAPL2Q9NP60 686 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 EXOC6BQ9Y2D4 811 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 CTDP1Q9Y5B0 961 aaPredicted RBP14.05□□□□□ -0.16
SDCBP-211ENST00000523441 UMODL1Q5DID0 1318 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 MROH7Q68CQ1 1323 aa14.05□□□□□ -0.16
SDCBP-211ENST00000523441 NCOR1O75376 2440 aa14.04□□□□□ -0.16
SDCBP-211ENST00000523441 A0A0U1RQG5 324 aaPredicted RBP14.04□□□□□ -0.16
SDCBP-211ENST00000523441 ARVCFO00192 962 aa14.04□□□□□ -0.16
SDCBP-211ENST00000523441 RFXAPO00287 272 aa14.04□□□□□ -0.16
SDCBP-211ENST00000523441 FGBP02675 491 aa14.04□□□□□ -0.16
SDCBP-211ENST00000523441 CHMP4CQ96CF2 233 aa14.04□□□□□ -0.16
SDCBP-211ENST00000523441 SPC25Q9HBM1 224 aa14.04□□□□□ -0.16
SDCBP-211ENST00000523441 GOPCQ9HD26 462 aa14.04□□□□□ -0.16
SDCBP-211ENST00000523441 IL23AQ9NPF7 189 aa14.04□□□□□ -0.16
SDCBP-211ENST00000523441 SWAP70Q9UH65 585 aa14.04□□□□□ -0.16
SDCBP-211ENST00000523441 PPP1R9AQ9ULJ8 1098 aa14.04□□□□□ -0.16
SDCBP-211ENST00000523441 MBD4O95243 580 aa14.03□□□□□ -0.16
SDCBP-211ENST00000523441 PTGS1P23219 599 aa14.03□□□□□ -0.16
SDCBP-211ENST00000523441 CDK8P49336 464 aa14.03□□□□□ -0.16
SDCBP-211ENST00000523441 ACVR2BQ13705 512 aa14.03□□□□□ -0.16
SDCBP-211ENST00000523441 CCDC144BQ3MJ40 725 aa14.03□□□□□ -0.16
SDCBP-211ENST00000523441 PCSK9Q8NBP7 692 aaKnown RBP14.03□□□□□ -0.16
SDCBP-211ENST00000523441 EPHX3Q9H6B9 360 aa14.03□□□□□ -0.16
SDCBP-211ENST00000523441 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.03□□□□□ -0.16
SDCBP-211ENST00000523441 ZNF214Q9UL59 606 aaPredicted RBP14.03□□□□□ -0.16
SDCBP-211ENST00000523441 ISY1Q9ULR0 285 aaKnown RBP14.03□□□□□ -0.16
SDCBP-211ENST00000523441 DIS3Q9Y2L1 958 aaKnown RBP14.03□□□□□ -0.16
SDCBP-211ENST00000523441 RIPK3Q9Y572 518 aa14.03□□□□□ -0.16
SDCBP-211ENST00000523441 ROBO3Q96MS0 1386 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 ELP1O95163 1332 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 DUSP11O75319 330 aaKnown RBP14.02□□□□□ -0.17
SDCBP-211ENST00000523441 CDK7P50613 346 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 RASIP1Q5U651 963 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 CCSAPQ6IQ19 270 aaPredicted RBP14.02□□□□□ -0.17
SDCBP-211ENST00000523441 CXCL17Q6UXB2 119 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 ITPRIPQ8IWB1 547 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 FAM126BQ8IXS8 530 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 AMOTL1Q8IY63 956 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 ANKRD35Q8N283 1001 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 C1QTNF1Q9BXJ1 281 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 MTIF3Q9H2K0 278 aaKnown RBP14.02□□□□□ -0.17
SDCBP-211ENST00000523441 HIPK3Q9H422 1215 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 RAVER2Q9HCJ3 691 aaKnown RBP14.02□□□□□ -0.17
SDCBP-211ENST00000523441 HOMER2Q9NSB8 354 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 MYH4Q9Y623 1939 aa14.02□□□□□ -0.17
SDCBP-211ENST00000523441 FAM86C2PA6NEL3 165 aa14.01□□□□□ -0.17
SDCBP-211ENST00000523441 USP17L12C9JPN9 530 aa14.01□□□□□ -0.17
SDCBP-211ENST00000523441 USP17L21D6R901 530 aa14.01□□□□□ -0.17
SDCBP-211ENST00000523441 IGSF3O75054 1194 aa14.01□□□□□ -0.17
SDCBP-211ENST00000523441 CHGBP05060 677 aa14.01□□□□□ -0.17
SDCBP-211ENST00000523441 BMP1P13497 986 aa14.01□□□□□ -0.17
SDCBP-211ENST00000523441 TTF1Q15361 905 aaPredicted RBP14.01□□□□□ -0.17
SDCBP-211ENST00000523441 KRT40Q6A162 431 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms