RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 TRIM42Q8IWZ5 723 aa11.24□□□□□ -0.61
PDGFRB-207ENST00000520579 ZNHIT6Q9NWK9 470 aaKnown RBP11.24□□□□□ -0.61
PDGFRB-207ENST00000520579 NLRP2Q9NX02 1062 aa11.24□□□□□ -0.61
PDGFRB-207ENST00000520579 A0A1B0GTH6 734 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 B4DLN1 442 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 KCNJ18B7U540 433 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 RANBP6O60518 1105 aaKnown RBP11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 KCNJ12Q14500 433 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 THEMIS2Q5TEJ8 643 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 LBHD1Q9BQE6 289 aaPredicted RBP11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 YIPF2Q9BWQ6 316 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 AGPAT5Q9NUQ2 364 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 ADD3Q9UEY8 706 aaKnown RBP11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 ANGEL1Q9UNK9 670 aaKnown RBP11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 AMOTL2Q9Y2J4 779 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 ZNF18P17022 549 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 MCM7P33993 719 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 LAMB3Q13751 1172 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 TTMPQ5BVD1 217 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 TAX1BP1Q86VP1 789 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 NOSTRINQ8IVI9 506 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 TRIM22Q8IYM9 498 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 MSL3Q8N5Y2 521 aaKnown RBP11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 TRIM4Q9C037 500 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 SALL1Q9NSC2 1324 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 CHUKO15111 745 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 LGR5O75473 907 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 MORC3Q14149 939 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 TTF1Q15361 905 aaPredicted RBP11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 APOA5Q6Q788 366 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 DNAAF5Q86Y56 855 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 TTC5Q8N0Z6 440 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 MARCH10Q8NA82 808 aaPredicted RBP11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 ALDH8A1Q9H2A2 487 aaPredicted RBP11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 FAM207AQ9NSI2 230 aaPredicted RBP11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 HPSEQ9Y251 543 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 NEXMIFQ5QGS0 1516 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 SIGLEC1Q9BZZ2 1709 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 ADGRL3Q9HAR2 1447 aa11.23□□□□□ -0.61
PDGFRB-207ENST00000520579 ARAP3Q8WWN8 1544 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 TLDC2A0PJX2 215 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 AKR1B10O60218 316 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 FAM153BP0C7A2 387 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 TBC1D25Q3MII6 688 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 FAM153CQ494X1 144 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 C8orf74Q6P047 294 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 B4GALNT2Q8NHY0 566 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 ZIM3Q96PE6 472 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 FAM167BQ9BTA0 163 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 DSCC1Q9BVC3 393 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 EPB41L5Q9HCM4 733 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 FAM153AQ9UHL3 310 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 REXO2Q9Y3B8 237 aaKnown RBP11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 KDRP35968 1356 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 RNMTO43148 476 aaKnown RBP11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 MTIF2P46199 727 aaKnown RBP11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 KIF5AQ12840 1032 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 KCNB1Q14721 858 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 TDRD12Q587J7 1177 aaKnown RBP11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 SLC40A1Q9NP59 571 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 MAGEC2Q9UBF1 373 aaPredicted RBP11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 ZMYM6O95789 1325 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 MEFVO15553 781 aaPredicted RBP11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 OPA1O60313 960 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 PECAM1P16284 738 aaPredicted RBP11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 TOB1P50616 345 aaPredicted RBP11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 MYO1EQ12965 1108 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 PPP1R7Q15435 360 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 SPA17Q15506 151 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 MIGA1Q8NAN2 632 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 TANGO6Q9C0B7 1094 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 HELLSQ9NRZ9 838 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 ARHGEF10O15013 1369 aa11.22□□□□□ -0.61
PDGFRB-207ENST00000520579 PPLO60437 1756 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 KRT86O43790 486 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 CARSP49589 748 aaKnown RBP11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 CUL4BQ13620 913 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 NAA35Q5VZE5 725 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 CCDC13Q8IYE1 715 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 ANKRD24Q8TF21 1146 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 ZNF496Q96IT1 587 aaPredicted RBP11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 ZCWPW1Q9H0M4 648 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 MMRN2Q9H8L6 949 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 AGLP35573 1532 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 RPS6KA5O75582 802 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 PYGBP11216 843 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 GPTP24298 496 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 CKAP4Q07065 602 aaKnown RBP11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 CCDC178Q5BJE1 867 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 HIBCHQ6NVY1 386 aaPredicted RBP11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 B4GALNT4Q76KP1 1039 aa11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 ZNF473Q8WTR7 871 aaKnown RBP11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 DDX21Q9NR30 783 aaKnown RBP eCLIP11.21□□□□□ -0.61
PDGFRB-207ENST00000520579 IFT172Q9UG01 1749 aa11.21□□□□□ -0.62
PDGFRB-207ENST00000520579 ANKRD33BA6NCL7 494 aa11.21□□□□□ -0.62
PDGFRB-207ENST00000520579 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.21□□□□□ -0.62
PDGFRB-207ENST00000520579 LSP1P33241 339 aa11.21□□□□□ -0.62
PDGFRB-207ENST00000520579 PAGE5Q96GU1 130 aa11.21□□□□□ -0.62
PDGFRB-207ENST00000520579 CCDC42Q96M95 316 aa11.21□□□□□ -0.62
PDGFRB-207ENST00000520579 MAP3K14Q99558 947 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms