RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, human

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDCBP-208	ENST00000520228	MAPK8IP1	Q9UQF2	711 aa		10.13	□□□□□ -0.79
SDCBP-208	ENST00000520228		U3KQE9	123 aa		10.13	□□□□□ -0.79
SDCBP-208	ENST00000520228	DNMT1	P26358	1616 aa	Known RBP	10.13	□□□□□ -0.79
SDCBP-208	ENST00000520228	PTPRK	Q15262	1439 aa		10.13	□□□□□ -0.79
SDCBP-208	ENST00000520228	LTBP3	Q9NS15	1303 aa		10.12	□□□□□ -0.79
SDCBP-208	ENST00000520228	RBL2	Q08999	1139 aa		10.12	□□□□□ -0.79
SDCBP-208	ENST00000520228	TNNI3K	Q59H18	835 aa		10.12	□□□□□ -0.79
SDCBP-208	ENST00000520228	C22orf34	Q6ZV56	151 aa		10.12	□□□□□ -0.79
SDCBP-208	ENST00000520228	DHX38	Q92620	1227 aa	Known RBP	10.12	□□□□□ -0.79
SDCBP-208	ENST00000520228	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
SDCBP-208	ENST00000520228	PRDM5	Q9NQX1	630 aa	Predicted RBP	10.12	□□□□□ -0.79
SDCBP-208	ENST00000520228	GTF2IRD1	Q9UHL9	959 aa		10.12	□□□□□ -0.79
SDCBP-208	ENST00000520228	ERBIN	Q96RT1	1412 aa		10.12	□□□□□ -0.79
SDCBP-208	ENST00000520228	RRBP1	Q9P2E9	1410 aa	Known RBP	10.11	□□□□□ -0.79
SDCBP-208	ENST00000520228		K7ELQ4	463 aa	Predicted RBP	10.11	□□□□□ -0.79
SDCBP-208	ENST00000520228	KLF4	O43474	513 aa		10.11	□□□□□ -0.79
SDCBP-208	ENST00000520228	HSPA2	P54652	639 aa		10.11	□□□□□ -0.79
SDCBP-208	ENST00000520228	COX4I2	Q96KJ9	171 aa		10.11	□□□□□ -0.79
SDCBP-208	ENST00000520228	KREMEN1	Q96MU8	473 aa		10.11	□□□□□ -0.79
SDCBP-208	ENST00000520228	TPX2	Q9ULW0	747 aa	Known RBP	10.11	□□□□□ -0.79
SDCBP-208	ENST00000520228	ROCK1	Q13464	1354 aa		10.11	□□□□□ -0.79
SDCBP-208	ENST00000520228	FER1L4	A9Z1Z3	1794 aa		10.11	□□□□□ -0.79
SDCBP-208	ENST00000520228	ADGRL2	O95490	1459 aa		10.1	□□□□□ -0.79
SDCBP-208	ENST00000520228	NPAT	Q14207	1427 aa		10.1	□□□□□ -0.79
SDCBP-208	ENST00000520228	STK10	O94804	968 aa	Known RBP	10.1	□□□□□ -0.79
SDCBP-208	ENST00000520228	GTF2F1	P35269	517 aa	Known RBP eCLIP	10.1	□□□□□ -0.79
SDCBP-208	ENST00000520228	OXCT1	P55809	520 aa		10.1	□□□□□ -0.79
SDCBP-208	ENST00000520228	SFRP5	Q5T4F7	317 aa		10.1	□□□□□ -0.79
SDCBP-208	ENST00000520228	RNF141	Q8WVD5	230 aa		10.1	□□□□□ -0.79
SDCBP-208	ENST00000520228	FBXL18	Q96ME1	805 aa		10.1	□□□□□ -0.79
SDCBP-208	ENST00000520228	MKNK2	Q9HBH9	465 aa		10.1	□□□□□ -0.79
SDCBP-208	ENST00000520228	PIM2	Q9P1W9	311 aa		10.1	□□□□□ -0.79
SDCBP-208	ENST00000520228	SLC12A7	Q9Y666	1083 aa		10.1	□□□□□ -0.79
SDCBP-208	ENST00000520228	LMTK3	Q96Q04	1460 aa		10.1	□□□□□ -0.79
SDCBP-208	ENST00000520228	UHRF1BP1	Q6BDS2	1440 aa		10.09	□□□□□ -0.79
SDCBP-208	ENST00000520228	ANKRD50	Q9ULJ7	1429 aa		10.09	□□□□□ -0.79
SDCBP-208	ENST00000520228	ZNF865	P0CJ78	1059 aa	Predicted RBP	10.09	□□□□□ -0.79
SDCBP-208	ENST00000520228	CYP7A1	P22680	504 aa		10.09	□□□□□ -0.79
SDCBP-208	ENST00000520228	ANKS3	Q6ZW76	656 aa		10.09	□□□□□ -0.79
SDCBP-208	ENST00000520228	SLC6A18	Q96N87	628 aa		10.09	□□□□□ -0.79
SDCBP-208	ENST00000520228	SUCO	Q9UBS9	1254 aa	Known RBP	10.09	□□□□□ -0.79
SDCBP-208	ENST00000520228	LEMD3	Q9Y2U8	911 aa		10.09	□□□□□ -0.79
SDCBP-208	ENST00000520228	KANK1	Q14678	1352 aa		10.09	□□□□□ -0.79
SDCBP-208	ENST00000520228	KDM5D	Q9BY66	1539 aa		10.08	□□□□□ -0.8
SDCBP-208	ENST00000520228	PRR33	A8MZF0	331 aa		10.08	□□□□□ -0.8
SDCBP-208	ENST00000520228	TGFB1	P01137	390 aa		10.08	□□□□□ -0.8
SDCBP-208	ENST00000520228	FOSL1	P15407	271 aa		10.08	□□□□□ -0.8
SDCBP-208	ENST00000520228	NBPF12	Q5TAG4	269 aa	Predicted RBP	10.08	□□□□□ -0.8
SDCBP-208	ENST00000520228	DHRS1	Q96LJ7	313 aa		10.08	□□□□□ -0.8
SDCBP-208	ENST00000520228		Q96M66	194 aa		10.08	□□□□□ -0.8
SDCBP-208	ENST00000520228	ASPN	Q9BXN1	380 aa		10.08	□□□□□ -0.8
SDCBP-208	ENST00000520228	ACTR10	Q9NZ32	417 aa		10.08	□□□□□ -0.8
SDCBP-208	ENST00000520228	ZNF214	Q9UL59	606 aa	Predicted RBP	10.08	□□□□□ -0.8
SDCBP-208	ENST00000520228	FAM135A	Q9P2D6	1515 aa		10.07	□□□□□ -0.8
SDCBP-208	ENST00000520228	FAM86C2P	A6NEL3	165 aa		10.07	□□□□□ -0.8
SDCBP-208	ENST00000520228	ADAM23	O75077	832 aa		10.07	□□□□□ -0.8
SDCBP-208	ENST00000520228	CLEC3A	O75596	197 aa		10.07	□□□□□ -0.8
SDCBP-208	ENST00000520228	KIR3DL1	P43629	444 aa		10.07	□□□□□ -0.8
SDCBP-208	ENST00000520228	PMS1	P54277	932 aa	Known RBP	10.07	□□□□□ -0.8
SDCBP-208	ENST00000520228	PPP2R5E	Q16537	467 aa		10.07	□□□□□ -0.8
SDCBP-208	ENST00000520228	HNRNPLL	Q8WVV9	542 aa	Known RBP	10.07	□□□□□ -0.8
SDCBP-208	ENST00000520228	PHAX	Q9H814	394 aa	Known RBP	10.07	□□□□□ -0.8
SDCBP-208	ENST00000520228	CROCC2	H7BZ55	1655 aa		10.06	□□□□□ -0.8
SDCBP-208	ENST00000520228	TNR	Q92752	1358 aa		10.06	□□□□□ -0.8
SDCBP-208	ENST00000520228	CYP26A1	O43174	497 aa		10.06	□□□□□ -0.8
SDCBP-208	ENST00000520228	HOXA10	P31260	410 aa	Predicted RBP	10.06	□□□□□ -0.8
SDCBP-208	ENST00000520228	PPFIBP1	Q86W92	1011 aa		10.06	□□□□□ -0.8
SDCBP-208	ENST00000520228	FAM181A	Q8N9Y4	354 aa		10.06	□□□□□ -0.8
SDCBP-208	ENST00000520228	UBXN4	Q92575	508 aa		10.06	□□□□□ -0.8
SDCBP-208	ENST00000520228	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.06	□□□□□ -0.8
SDCBP-208	ENST00000520228	RNF112	Q9ULX5	631 aa		10.06	□□□□□ -0.8
SDCBP-208	ENST00000520228	PLAGL2	Q9UPG8	496 aa		10.06	□□□□□ -0.8
SDCBP-208	ENST00000520228	CAPN6	Q9Y6Q1	641 aa		10.06	□□□□□ -0.8
SDCBP-208	ENST00000520228	ABCC3	O15438	1527 aa		10.06	□□□□□ -0.8
SDCBP-208	ENST00000520228	PZP	P20742	1482 aa		10.05	□□□□□ -0.8
SDCBP-208	ENST00000520228	EIF2AK4	Q9P2K8	1649 aa	Known RBP	10.05	□□□□□ -0.8
SDCBP-208	ENST00000520228		C9IYK1	514 aa		10.05	□□□□□ -0.8
SDCBP-208	ENST00000520228	RAB33A	Q14088	237 aa		10.05	□□□□□ -0.8
SDCBP-208	ENST00000520228	NKPD1	Q17RQ9	610 aa		10.05	□□□□□ -0.8
SDCBP-208	ENST00000520228	KLHL6	Q8WZ60	621 aa		10.05	□□□□□ -0.8
SDCBP-208	ENST00000520228	LRRC4C	Q9HCJ2	640 aa		10.05	□□□□□ -0.8
SDCBP-208	ENST00000520228	RNF17	Q9BXT8	1623 aa	Known RBP	10.04	□□□□□ -0.8
SDCBP-208	ENST00000520228	C3	P01024	1663 aa		10.04	□□□□□ -0.8
SDCBP-208	ENST00000520228	CLTC	Q00610	1675 aa	Known RBP	10.04	□□□□□ -0.8
SDCBP-208	ENST00000520228	LRRN2	O75325	713 aa		10.04	□□□□□ -0.8
SDCBP-208	ENST00000520228	RNF4	P78317	190 aa		10.04	□□□□□ -0.8
SDCBP-208	ENST00000520228	NBPF6	Q5VWK0	638 aa		10.04	□□□□□ -0.8
SDCBP-208	ENST00000520228	CKAP2L	Q8IYA6	745 aa		10.04	□□□□□ -0.8
SDCBP-208	ENST00000520228	ZNF512B	Q96KM6	892 aa	Predicted RBP	10.04	□□□□□ -0.8
SDCBP-208	ENST00000520228	NBPF4	Q96M43	638 aa		10.04	□□□□□ -0.8
SDCBP-208	ENST00000520228	PPP1R1B	Q9UD71	204 aa	Predicted RBP	10.04	□□□□□ -0.8
SDCBP-208	ENST00000520228	ZC3H7B	Q9UGR2	993 aa	Known RBP	10.04	□□□□□ -0.8
SDCBP-208	ENST00000520228	MROH2A	A6NES4	1674 aa		10.03	□□□□□ -0.8
SDCBP-208	ENST00000520228	CBX7	O95931	251 aa		10.03	□□□□□ -0.8
SDCBP-208	ENST00000520228	CEACAM5	P06731	702 aa		10.03	□□□□□ -0.8
SDCBP-208	ENST00000520228	TNK2	Q07912	1038 aa		10.03	□□□□□ -0.8
SDCBP-208	ENST00000520228	MSMP	Q1L6U9	139 aa		10.03	□□□□□ -0.8
SDCBP-208	ENST00000520228	SPACA3	Q8IXA5	215 aa		10.03	□□□□□ -0.8
SDCBP-208	ENST00000520228	MFSD4A	Q8N468	514 aa		10.03	□□□□□ -0.8
SDCBP-208	ENST00000520228	CELF2-AS1	Q8N7Q2	184 aa		10.03	□□□□□ -0.8

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