RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 SLC38A10Q9HBR0 1119 aa35.13■■■■□ 3.21
SYNPO-203ENST00000518872 TCP11L1Q9NUJ3 509 aa35.13■■■■□ 3.21
SYNPO-203ENST00000518872 STX8Q9UNK0 236 aa35.13■■■■□ 3.21
SYNPO-203ENST00000518872 PLA2G6O60733 806 aa35.12■■■■□ 3.21
SYNPO-203ENST00000518872 CWC27Q6UX04 472 aaKnown RBP35.12■■■■□ 3.21
SYNPO-203ENST00000518872 DHX30Q7L2E3 1194 aaKnown RBP eCLIP35.12■■■■□ 3.21
SYNPO-203ENST00000518872 DIS3Q9Y2L1 958 aaKnown RBP35.12■■■■□ 3.21
SYNPO-203ENST00000518872 MSCO60682 206 aa35.11■■■■□ 3.21
SYNPO-203ENST00000518872 ZBED4O75132 1171 aa35.11■■■■□ 3.21
SYNPO-203ENST00000518872 CYBAP13498 195 aa35.11■■■■□ 3.21
SYNPO-203ENST00000518872 CYP2C19P33261 490 aa35.11■■■■□ 3.21
SYNPO-203ENST00000518872 NT5C2P49902 561 aa35.11■■■■□ 3.21
SYNPO-203ENST00000518872 OAZ1P54368 228 aa35.11■■■■□ 3.21
SYNPO-203ENST00000518872 TTC22Q5TAA0 569 aa35.11■■■■□ 3.21
SYNPO-203ENST00000518872 STAG1Q8WVM7 1258 aa35.11■■■■□ 3.21
SYNPO-203ENST00000518872 DPF3Q92784 378 aa35.11■■■■□ 3.21
SYNPO-203ENST00000518872 MMP19Q99542 508 aa35.11■■■■□ 3.21
SYNPO-203ENST00000518872 NMT2O60551 498 aa35.1■■■■□ 3.21
SYNPO-203ENST00000518872 KCTD2Q14681 263 aa35.1■■■■□ 3.21
SYNPO-203ENST00000518872 AKNAD1Q5T1N1 836 aa35.1■■■■□ 3.21
SYNPO-203ENST00000518872 DIS3LQ8TF46 1054 aaKnown RBP35.1■■■■□ 3.21
SYNPO-203ENST00000518872 MAML3Q96JK9 1138 aa35.1■■■■□ 3.21
SYNPO-203ENST00000518872 NBPF3Q9H094 633 aa35.1■■■■□ 3.21
SYNPO-203ENST00000518872 STAT2P52630 851 aa35.09■■■■□ 3.21
SYNPO-203ENST00000518872 SNRNP48Q6IEG0 339 aaKnown RBP35.09■■■■□ 3.21
SYNPO-203ENST00000518872 FAM160B2Q86V87 743 aa35.09■■■■□ 3.21
SYNPO-203ENST00000518872 KIFC2Q96AC6 838 aa35.09■■■■□ 3.21
SYNPO-203ENST00000518872 RNF41Q9H4P4 317 aaPredicted RBP35.09■■■■□ 3.21
SYNPO-203ENST00000518872 SLC1A4P43007 532 aa35.08■■■■□ 3.21
SYNPO-203ENST00000518872 CHURC1Q8WUH1 139 aa35.08■■■■□ 3.21
SYNPO-203ENST00000518872 DSCC1Q9BVC3 393 aa35.08■■■■□ 3.21
SYNPO-203ENST00000518872 DDX20Q9UHI6 824 aaKnown RBP35.08■■■■□ 3.21
SYNPO-203ENST00000518872 H0YGN5 161 aa35.07■■■■□ 3.2
SYNPO-203ENST00000518872 GSPT1P15170 499 aaKnown RBP35.07■■■■□ 3.2
SYNPO-203ENST00000518872 HAND2P61296 217 aa35.07■■■■□ 3.2
SYNPO-203ENST00000518872 MFSD6Q6ZSS7 791 aa35.07■■■■□ 3.2
SYNPO-203ENST00000518872 TRPV1Q8NER1 839 aa35.07■■■■□ 3.2
SYNPO-203ENST00000518872 TOMM22Q9NS69 142 aa35.07■■■■□ 3.2
SYNPO-203ENST00000518872 NR2E3Q9Y5X4 410 aa35.07■■■■□ 3.2
SYNPO-203ENST00000518872 TMEM232C9JQI7 657 aa35.06■■■■□ 3.2
SYNPO-203ENST00000518872 ZNF792Q3KQV3 632 aa35.06■■■■□ 3.2
SYNPO-203ENST00000518872 RCSD1Q6JBY9 416 aa35.06■■■■□ 3.2
SYNPO-203ENST00000518872 TBC1D10CQ8IV04 446 aa35.06■■■■□ 3.2
SYNPO-203ENST00000518872 NRBP1Q9UHY1 535 aa35.06■■■■□ 3.2
SYNPO-203ENST00000518872 RIPK3Q9Y572 518 aa35.06■■■■□ 3.2
SYNPO-203ENST00000518872 CTDP1Q9Y5B0 961 aaPredicted RBP35.06■■■■□ 3.2
SYNPO-203ENST00000518872 MCCP23508 829 aa35.05■■■■□ 3.2
SYNPO-203ENST00000518872 RRP12Q5JTH9 1297 aaKnown RBP35.05■■■■□ 3.2
SYNPO-203ENST00000518872 C11orf49Q9H6J7 331 aa35.05■■■■□ 3.2
SYNPO-203ENST00000518872 ZNF213O14771 459 aa35.04■■■■□ 3.2
SYNPO-203ENST00000518872 COL6A1P12109 1028 aa35.04■■■■□ 3.2
SYNPO-203ENST00000518872 TTC14Q96N46 770 aa35.04■■■■□ 3.2
SYNPO-203ENST00000518872 FBXO40Q9UH90 709 aa35.04■■■■□ 3.2
SYNPO-203ENST00000518872 TOP1P11387 765 aaKnown RBP35.03■■■■□ 3.2
SYNPO-203ENST00000518872 CPXCR1Q8N123 301 aa35.03■■■■□ 3.2
SYNPO-203ENST00000518872 CHST13Q8NET6 341 aa35.03■■■■□ 3.2
SYNPO-203ENST00000518872 DCAF4Q8WV16 495 aa35.03■■■■□ 3.2
SYNPO-203ENST00000518872 RAVER2Q9HCJ3 691 aaKnown RBP35.03■■■■□ 3.2
SYNPO-203ENST00000518872 RAD50Q92878 1312 aa35.03■■■■□ 3.2
SYNPO-203ENST00000518872 SMCHD1A6NHR9 2005 aa35.03■■■■□ 3.2
SYNPO-203ENST00000518872 DNAJC25-GNG10A0A024R161 153 aa35.02■■■■□ 3.2
SYNPO-203ENST00000518872 PGK2P07205 417 aa35.02■■■■□ 3.2
SYNPO-203ENST00000518872 MSL3Q8N5Y2 521 aaKnown RBP35.02■■■■□ 3.2
SYNPO-203ENST00000518872 SEPT4O43236 478 aa35.01■■■■□ 3.2
SYNPO-203ENST00000518872 EVI5O60447 810 aa35.01■■■■□ 3.2
SYNPO-203ENST00000518872 CNGA1P29973 690 aa35.01■■■■□ 3.2
SYNPO-203ENST00000518872 ESR2Q92731 530 aa35.01■■■■□ 3.2
SYNPO-203ENST00000518872 TMEM47Q9BQJ4 181 aa35.01■■■■□ 3.2
SYNPO-203ENST00000518872 TINF2Q9BSI4 451 aa35.01■■■■□ 3.2
SYNPO-203ENST00000518872 KCTD1Q719H9 257 aa35■■■■□ 3.19
SYNPO-203ENST00000518872 CTNNA3Q9UI47 895 aa35■■■■□ 3.19
SYNPO-203ENST00000518872 PFASO15067 1338 aa35■■■■□ 3.19
SYNPO-203ENST00000518872 NEDD4P46934 1319 aa35■■■■□ 3.19
SYNPO-203ENST00000518872 ZNF536O15090 1300 aa34.99■■■■□ 3.19
SYNPO-203ENST00000518872 BTNL9Q6UXG8 535 aa34.98■■■■□ 3.19
SYNPO-203ENST00000518872 IL25Q9H293 177 aa34.98■■■■□ 3.19
SYNPO-203ENST00000518872 ISY1Q9ULR0 285 aaKnown RBP34.98■■■■□ 3.19
SYNPO-203ENST00000518872 IKQ13123 557 aaPredicted RBP34.97■■■■□ 3.19
SYNPO-203ENST00000518872 IMMTQ16891 758 aaKnown RBP34.97■■■■□ 3.19
SYNPO-203ENST00000518872 TKFCQ3LXA3 575 aa34.97■■■■□ 3.19
SYNPO-203ENST00000518872 ZNF467Q7Z7K2 595 aaPredicted RBP34.97■■■■□ 3.19
SYNPO-203ENST00000518872 DDX11Q96FC9 970 aa34.97■■■■□ 3.19
SYNPO-203ENST00000518872 PRR12Q9ULL5 1215 aa34.97■■■■□ 3.19
SYNPO-203ENST00000518872 TRIOBPQ9H2D6 2365 aa34.97■■■■□ 3.19
SYNPO-203ENST00000518872 SLC34A2O95436 690 aa34.96■■■■□ 3.19
SYNPO-203ENST00000518872 CCDC178Q5BJE1 867 aa34.96■■■■□ 3.19
SYNPO-203ENST00000518872 HABP4Q5JVS0 413 aaKnown RBP34.96■■■■□ 3.19
SYNPO-203ENST00000518872 MAMDC4Q6UXC1 1216 aa34.96■■■■□ 3.19
SYNPO-203ENST00000518872 RASGRP2Q7LDG7 609 aa34.96■■■■□ 3.19
SYNPO-203ENST00000518872 DNM1LO00429 736 aa34.95■■■■□ 3.19
SYNPO-203ENST00000518872 DGKHQ86XP1 1220 aa34.95■■■■□ 3.19
SYNPO-203ENST00000518872 RUFY2Q8WXA3 655 aa34.95■■■■□ 3.19
SYNPO-203ENST00000518872 SYNGAP1Q96PV0 1343 aa34.95■■■■□ 3.19
SYNPO-203ENST00000518872 SNHG28P0DPA3 235 aa34.94■■■■□ 3.18
SYNPO-203ENST00000518872 CHMLP26374 656 aa34.94■■■■□ 3.18
SYNPO-203ENST00000518872 CCDC96Q2M329 555 aa34.94■■■■□ 3.18
SYNPO-203ENST00000518872 PRAMEF19Q5SWL8 479 aa34.94■■■■□ 3.18
SYNPO-203ENST00000518872 ACAD9Q9H845 621 aa34.94■■■■□ 3.18
SYNPO-203ENST00000518872 COLQQ9Y215 455 aaPredicted RBP34.94■■■■□ 3.18
SYNPO-203ENST00000518872 MCM3APO60318 1980 aa34.94■■■■□ 3.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms