RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 KAT14Q9H8E8 782 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 RTL9Q8NET4 1388 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 MCM3P25205 808 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 UBE4AQ14139 1066 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 TMTC1Q8IUR5 882 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 FAM212AQ96EL1 285 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 CTAGE1Q96RT6 745 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 CSRNP2Q9H175 543 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 MTMR7Q9Y216 660 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 PCDHB6Q9Y5E3 794 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 SAR1BQ9Y6B6 198 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 TNKSO95271 1327 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 CDR1P51861 262 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 PPP2R5BQ15173 497 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 CATIPQ7Z7H3 387 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 TACC3Q9Y6A5 838 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 ERFEQ4G0M1 354 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 CLEC4GQ6UXB4 293 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 PANX2Q96RD6 677 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 MMS19Q96T76 1030 aa10.81□□□□□ -0.68
VCAN-210ENST00000513960 MAGEC2Q9UBF1 373 aaPredicted RBP10.81□□□□□ -0.68
VCAN-210ENST00000513960 RCAN1P53805 252 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 ZNF174Q15697 407 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 IFIT1BQ5T764 474 aaKnown RBP10.8□□□□□ -0.68
VCAN-210ENST00000513960 EPSTI1Q96J88 318 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 PLIN2Q99541 437 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 NAA15Q9BXJ9 866 aaKnown RBP10.8□□□□□ -0.68
VCAN-210ENST00000513960 GEMIN8Q9NWZ8 242 aaKnown RBP10.8□□□□□ -0.68
VCAN-210ENST00000513960 SLC7A5Q01650 507 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 PDCLQ13371 301 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 CCDC96Q2M329 555 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 SPATA1Q5VX52 437 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 HNRNPLLQ8WVV9 542 aaKnown RBP10.8□□□□□ -0.68
VCAN-210ENST00000513960 JAKMIP2Q96AA8 810 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 CHP1Q99653 195 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 FAM237AA0A1B0GTK4 181 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 ZNF185O15231 689 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 C4AP0C0L4 1744 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 C4BP0C0L5 1744 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 TRIM21P19474 475 aaKnown RBP10.8□□□□□ -0.68
VCAN-210ENST00000513960 TBX2Q13207 712 aaPredicted RBP10.8□□□□□ -0.68
VCAN-210ENST00000513960 KANK3Q6NY19 840 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 MSANTD4Q8NCY6 345 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 SELENOOQ9BVL4 669 aa10.8□□□□□ -0.68
VCAN-210ENST00000513960 EPN1Q9Y6I3 576 aaPredicted RBP10.8□□□□□ -0.68
VCAN-210ENST00000513960 FRMD3A2A2Y4 597 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 MYO1BO43795 1136 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 ZPR1O75312 459 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 ATP1A1P05023 1023 aaKnown RBP10.79□□□□□ -0.68
VCAN-210ENST00000513960 CKAP4Q07065 602 aaKnown RBP10.79□□□□□ -0.68
VCAN-210ENST00000513960 NR1I3Q14994 352 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 IQUBQ8NA54 791 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 IFT81Q8WYA0 676 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 RNF26Q9BY78 433 aaPredicted RBP10.79□□□□□ -0.68
VCAN-210ENST00000513960 BSDC1Q9NW68 430 aaPredicted RBP10.79□□□□□ -0.68
VCAN-210ENST00000513960 BCCIPQ9P287 314 aaKnown RBP eCLIP10.79□□□□□ -0.68
VCAN-210ENST00000513960 LUC7L2Q9Y383 392 aaKnown RBP10.79□□□□□ -0.68
VCAN-210ENST00000513960 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.79□□□□□ -0.68
VCAN-210ENST00000513960 HSF2BPO75031 334 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 ECM2O94769 699 aaPredicted RBP10.79□□□□□ -0.68
VCAN-210ENST00000513960 ERCC3P19447 782 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 PTPREP23469 700 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 ADGRA1Q86SQ6 560 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 ZSCAN10Q96SZ4 725 aaPredicted RBP10.79□□□□□ -0.68
VCAN-210ENST00000513960 KCNQ2O43526 872 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 PRDM1O75626 825 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 RNASE9P60153 205 aaKnown RBP10.79□□□□□ -0.68
VCAN-210ENST00000513960 DYNLL1P63167 89 aaKnown RBP10.79□□□□□ -0.68
VCAN-210ENST00000513960 ENOX2Q16206 610 aaKnown RBP10.79□□□□□ -0.68
VCAN-210ENST00000513960 CXorf56Q9H5V9 222 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 HPCAL4Q9UM19 191 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 SLIT2O94813 1529 aa10.79□□□□□ -0.68
VCAN-210ENST00000513960 LRP5O75197 1615 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 TRIM75PA6NK02 468 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 TUBBP07437 444 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 HPDP32754 393 aaPredicted RBP10.78□□□□□ -0.68
VCAN-210ENST00000513960 TOB1P50616 345 aaPredicted RBP10.78□□□□□ -0.68
VCAN-210ENST00000513960 SCLT1Q96NL6 688 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 YY1AP1Q9H869 796 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 RAB21Q9UL25 225 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 MINPP1Q9UNW1 487 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 DOT1LQ8TEK3 1739 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 MYCNP04198 464 aaPredicted RBP10.78□□□□□ -0.68
VCAN-210ENST00000513960 GYPCP04921 128 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 CXCR5P32302 372 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 CYP27A1Q02318 531 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 TUBB2AQ13885 445 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 SF3B3Q15393 1217 aaKnown RBP10.78□□□□□ -0.68
VCAN-210ENST00000513960 IQCEQ6IPM2 695 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 MAATS1Q7Z4T9 603 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 TRIM47Q96LD4 638 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 TUBB2BQ9BVA1 445 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 VPS54Q9P1Q0 977 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 ANAPC4Q9UJX5 808 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 V9GY48 417 aaPredicted RBP10.78□□□□□ -0.68
VCAN-210ENST00000513960 ZNF804BA4D1E1 1349 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 A0A1B0GTH6 734 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 MYO1FO00160 1098 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 TULP1O00294 542 aaPredicted RBP10.78□□□□□ -0.68
VCAN-210ENST00000513960 KRT86O43790 486 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms