RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 LRRIQ3A6PVS8 624 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 USP5P45974 858 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 KLK7P49862 253 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 ERFEQ4G0M1 354 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 TYW1BQ6NUM6 668 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 BLIDQ8IZY5 108 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 MB21D1Q8N884 522 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 CELF1Q92879 486 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 BRIP1Q9BX63 1249 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 DCP1AQ9NPI6 582 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 AGPAT5Q9NUQ2 364 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 B4DLN1 442 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 H7C1D1 291 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 TRIM66O15016 1216 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 DDAH1O94760 285 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 ATP1A1P05023 1023 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 CYP27A1Q02318 531 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 MECOMQ03112 1051 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 ITPK1Q13572 414 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 PFKFB3Q16875 520 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 INF2Q27J81 1249 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 PARP10Q53GL7 1025 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 DTHD1Q6ZMT9 781 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 KIAA1328Q86T90 577 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 C10orf67Q8IYJ2 551 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 MMS19Q96T76 1030 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 RMND1Q9NWS8 449 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 CCDC194A0A1B0GVG4 234 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 USP17L8P0C7I0 530 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 AMPD2Q01433 879 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 CPVLQ9H3G5 476 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 MCM9Q9NXL9 1143 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 MINPP1Q9UNW1 487 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 DUSP10Q9Y6W6 482 aa10.4□□□□□ -0.74
LIMCH1-215ENST00000512632 SLIT2O94813 1529 aa10.4□□□□□ -0.75
LIMCH1-215ENST00000512632 TULP2O00295 520 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 FECHP22830 423 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 TFAP4Q01664 338 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 ADSSL1Q8N142 457 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 CCDC148Q8NFR7 591 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 LACRTQ9GZZ8 138 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 TUBB2AQ13885 445 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 NAALADL2Q58DX5 795 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 FOXR1Q6PIV2 292 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 WDR59Q6PJI9 974 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 TUBB2BQ9BVA1 445 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 MAGEC2Q9UBF1 373 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 ECM29Q5VYK3 1845 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 LOC102724428A0A0B4J2F2 783 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 TRIM21P19474 475 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 ACTN2P35609 894 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 SIK1P57059 783 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 RCSD1Q6JBY9 416 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 C4orf32Q8N8J7 132 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 RIN2Q8WYP3 895 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 NSUN4Q96CB9 384 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 DYNLL2Q96FJ2 89 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 KAT14Q9H8E8 782 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 DISC1Q9NRI5 854 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 MYH2Q9UKX2 1941 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 ZNF804BA4D1E1 1349 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 ANKRD65E5RJM6 399 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 ERCC3P19447 782 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 HERVK_113P62684 666 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 TBC1D8BQ0IIM8 1120 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 LEKR1Q6ZMV7 388 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 HEATR3Q7Z4Q2 680 aa10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 GSPT2Q8IYD1 628 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 FEZ2Q9UHY8 353 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.39□□□□□ -0.75
LIMCH1-215ENST00000512632 MACROD2A1Z1Q3 448 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 RCCD1A6NED2 376 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 LGALS16A8MUM7 142 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 ZNF185O15231 689 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 LONP1P36776 959 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 TRAPPC10P48553 1259 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 MRPS25P82663 173 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 UBE4AQ14139 1066 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 TRIM14Q14142 442 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 CSGALNACT2Q8N6G5 542 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 HPS3Q969F9 1004 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 CRNKL1Q9BZJ0 848 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 GBP3Q9H0R5 595 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 HAUS4Q9H6D7 363 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 SAR1BQ9Y6B6 198 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 TOGARAM1Q9Y4F4 1720 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 ZNF335Q9H4Z2 1342 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 NKRFO15226 690 aaKnown RBP eCLIP10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 GOLGA8HP0CJ92 632 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 CCDC178Q5BJE1 867 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 PLEKHA4Q9H4M7 779 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 MYO1AQ9UBC5 1043 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 PSMA7O14818 248 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 MUM1L1Q5H9M0 696 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 PNMA1Q8ND90 353 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 GOLGA5Q8TBA6 731 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 CAGE1Q8TC20 777 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 DRC1Q96MC2 740 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 TUBGCP2Q9BSJ2 902 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 STX8Q9UNK0 236 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms