RNA–Protein interactions for RNA: ENST00000511871.1

SIM1-204, Transcript of SIM bHLH transcription factor 1, human

TSL 1 (best)

Gene SIM1, Length 1,609 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SIM1-204	ENST00000511871	ERCC3	P19447	782 aa		18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	PTPRE	P23469	700 aa		18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	CCDC96	Q2M329	555 aa		18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	WDR78	Q5VTH9	848 aa		18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	NBPF11	Q86T75	865 aa		18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	RIOX2	Q8IUF8	465 aa		18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	MB21D2	Q8IYB1	491 aa	Predicted RBP	18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	SLAIN1	Q8ND83	568 aa		18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	PNMA1	Q8ND90	353 aa		18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	PXYLP1	Q8TE99	480 aa		18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	ZNF333	Q96JL9	665 aa		18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	SLC38A10	Q9HBR0	1119 aa		18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	CWC22	Q9HCG8	908 aa	Known RBP	18.87	■□□□□ 0.61
SIM1-204	ENST00000511871	ZBED4	O75132	1171 aa		18.86	■□□□□ 0.61
SIM1-204	ENST00000511871	FDX1	P10109	184 aa		18.86	■□□□□ 0.61
SIM1-204	ENST00000511871	STAT3	P40763	770 aa		18.86	■□□□□ 0.61
SIM1-204	ENST00000511871	MROH8	Q9H579	483 aa		18.86	■□□□□ 0.61
SIM1-204	ENST00000511871	KAT14	Q9H8E8	782 aa		18.86	■□□□□ 0.61
SIM1-204	ENST00000511871	SLC15A5	A6NIM6	579 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	ATP2A1	O14983	1001 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	SLC25A27	O95847	323 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	ELN	P15502	786 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	ANTXR2	P58335	489 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	TTBK2	Q6IQ55	1244 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	BTNL9	Q6UXG8	535 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	NCAPG2	Q86XI2	1143 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	FRMPD2	Q68DX3	1309 aa	Predicted RBP	18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	CYP2B6	P20813	491 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	ZNF543	Q08ER8	600 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	IK	Q13123	557 aa	Predicted RBP	18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	MAP2K5	Q13163	448 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	GRB14	Q14449	540 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	IFIT1B	Q5T764	474 aa	Known RBP	18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	RNF20	Q5VTR2	975 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	TEX13B	Q9BXU2	312 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	GPCPD1	Q9NPB8	672 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	PRR12	Q9ULL5	1215 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	IVNS1ABP	Q9Y6Y0	642 aa		18.85	■□□□□ 0.61
SIM1-204	ENST00000511871	IFIT3	O14879	490 aa	Known RBP	18.84	■□□□□ 0.61
SIM1-204	ENST00000511871	STRN	O43815	780 aa		18.84	■□□□□ 0.61
SIM1-204	ENST00000511871	XRCC5	P13010	732 aa	Known RBP	18.84	■□□□□ 0.61
SIM1-204	ENST00000511871	COPB2	P35606	906 aa		18.84	■□□□□ 0.61
SIM1-204	ENST00000511871	RGS2	P41220	211 aa		18.84	■□□□□ 0.61
SIM1-204	ENST00000511871	OAZ1	P54368	228 aa		18.84	■□□□□ 0.61
SIM1-204	ENST00000511871	CHST3	Q7LGC8	479 aa		18.84	■□□□□ 0.61
SIM1-204	ENST00000511871	CPXCR1	Q8N123	301 aa		18.84	■□□□□ 0.61
SIM1-204	ENST00000511871	CTDP1	Q9Y5B0	961 aa	Predicted RBP	18.84	■□□□□ 0.61
SIM1-204	ENST00000511871	SNRNP48	Q6IEG0	339 aa	Known RBP	18.83	■□□□□ 0.61
SIM1-204	ENST00000511871	RAVER2	Q9HCJ3	691 aa	Known RBP	18.83	■□□□□ 0.61
SIM1-204	ENST00000511871	RIPK3	Q9Y572	518 aa		18.83	■□□□□ 0.61
SIM1-204	ENST00000511871	CENPF	P49454	3210 aa		18.83	■□□□□ 0.6
SIM1-204	ENST00000511871	SLC16A2	P36021	539 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	COL9A3	Q14050	684 aa	Predicted RBP	18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	TSGA10IP	Q3SY00	556 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	GPATCH4	Q5T3I0	446 aa	Known RBP	18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	SYDE2	Q5VT97	1194 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	RASEF	Q8IZ41	740 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	IGDCC4	Q8TDY8	1250 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	SENP2	Q9HC62	589 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	ZNF536	O15090	1300 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	ERICH2	A1L162	156 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	REC8	O95072	547 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	HOXC6	P09630	235 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	ADORA2A	P29274	412 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	SOX10	P56693	466 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	WTAP	Q15007	396 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	SART3	Q15020	963 aa	Known RBP	18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	ABRA	Q8N0Z2	381 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	TRIB2	Q92519	343 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	APBA2	Q99767	749 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	MTA3	Q9BTC8	594 aa		18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	BIN2	Q9UBW5	565 aa	Predicted RBP	18.82	■□□□□ 0.6
SIM1-204	ENST00000511871	PRC1	O43663	620 aa		18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	INHA	P05111	366 aa		18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	GOLGA8H	P0CJ92	632 aa		18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	MCM5	P33992	734 aa		18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	SNAP25	P60880	206 aa		18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	UBXN2A	P68543	259 aa		18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	MTFR1	Q15390	333 aa		18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	ASPRV1	Q53RT3	343 aa		18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	TMEM67	Q5HYA8	995 aa		18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	TRMT44	Q8IYL2	757 aa	Known RBP	18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	KCNB2	Q92953	911 aa		18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	RANBP17	Q9H2T7	1088 aa	Known RBP	18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	BAZ2B	Q9UIF8	2168 aa	Known RBP	18.81	■□□□□ 0.6
SIM1-204	ENST00000511871	MYC	P01106	439 aa	Predicted RBP	18.8	■□□□□ 0.6
SIM1-204	ENST00000511871	HMGCR	P04035	888 aa		18.8	■□□□□ 0.6
SIM1-204	ENST00000511871	FCER1A	P12319	257 aa		18.8	■□□□□ 0.6
SIM1-204	ENST00000511871	HSPA4	P34932	840 aa		18.8	■□□□□ 0.6
SIM1-204	ENST00000511871	CCL14	Q16627	93 aa		18.8	■□□□□ 0.6
SIM1-204	ENST00000511871	NPLOC4	Q8TAT6	608 aa		18.8	■□□□□ 0.6
SIM1-204	ENST00000511871	MMP19	Q99542	508 aa		18.8	■□□□□ 0.6
SIM1-204	ENST00000511871	EPB41L2	O43491	1005 aa	Known RBP	18.79	■□□□□ 0.6
SIM1-204	ENST00000511871	COBL	O75128	1261 aa		18.79	■□□□□ 0.6
SIM1-204	ENST00000511871	ZKSCAN1	P17029	563 aa	Predicted RBP	18.79	■□□□□ 0.6
SIM1-204	ENST00000511871	SLC4A3	P48751	1232 aa		18.79	■□□□□ 0.6
SIM1-204	ENST00000511871	CCDC174	Q6PII3	467 aa		18.79	■□□□□ 0.6
SIM1-204	ENST00000511871	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	18.79	■□□□□ 0.6
SIM1-204	ENST00000511871	TMEM87B	Q96K49	555 aa		18.79	■□□□□ 0.6
SIM1-204	ENST00000511871	AGBL1	Q96MI9	1066 aa		18.79	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms