RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 ATP2A1O14983 1001 aa21.27■■□□□ 1
TPM3-220ENST00000509601 PGK2P07205 417 aa21.27■■□□□ 1
TPM3-220ENST00000509601 BMP3P12645 472 aa21.27■■□□□ 1
TPM3-220ENST00000509601 CNGA1P29973 690 aa21.27■■□□□ 1
TPM3-220ENST00000509601 ZNF792Q3KQV3 632 aa21.27■■□□□ 1
TPM3-220ENST00000509601 PRAMEF19Q5SWL8 479 aa21.27■■□□□ 1
TPM3-220ENST00000509601 SLC38A10Q9HBR0 1119 aa21.27■■□□□ 1
TPM3-220ENST00000509601 PFASO15067 1338 aa21.27■□□□□ 0.99
TPM3-220ENST00000509601 ALPK3Q96L96 1907 aa21.26■□□□□ 0.99
TPM3-220ENST00000509601 RANBP6O60518 1105 aaKnown RBP21.26■□□□□ 0.99
TPM3-220ENST00000509601 ZBED4O75132 1171 aa21.26■□□□□ 0.99
TPM3-220ENST00000509601 KIFC2Q96AC6 838 aa21.26■□□□□ 0.99
TPM3-220ENST00000509601 TEX13BQ9BXU2 312 aa21.26■□□□□ 0.99
TPM3-220ENST00000509601 CCDC171Q6TFL3 1326 aa21.26■□□□□ 0.99
TPM3-220ENST00000509601 TRIOBPQ9H2D6 2365 aa21.25■□□□□ 0.99
TPM3-220ENST00000509601 MCCP23508 829 aa21.25■□□□□ 0.99
TPM3-220ENST00000509601 PDE4AP27815 886 aa21.25■□□□□ 0.99
TPM3-220ENST00000509601 COPB2P35606 906 aa21.25■□□□□ 0.99
TPM3-220ENST00000509601 IRX6P78412 446 aaPredicted RBP21.25■□□□□ 0.99
TPM3-220ENST00000509601 KCTD2Q14681 263 aa21.25■□□□□ 0.99
TPM3-220ENST00000509601 SNRNP48Q6IEG0 339 aaKnown RBP21.25■□□□□ 0.99
TPM3-220ENST00000509601 CHRDL2Q6WN34 429 aa21.25■□□□□ 0.99
TPM3-220ENST00000509601 CPXCR1Q8N123 301 aa21.25■□□□□ 0.99
TPM3-220ENST00000509601 GMCL1Q96IK5 515 aa21.25■□□□□ 0.99
TPM3-220ENST00000509601 PRO3102Q9H379 93 aa21.25■□□□□ 0.99
TPM3-220ENST00000509601 RAVER2Q9HCJ3 691 aaKnown RBP21.25■□□□□ 0.99
TPM3-220ENST00000509601 DIS3Q9Y2L1 958 aaKnown RBP21.25■□□□□ 0.99
TPM3-220ENST00000509601 TMEM232C9JQI7 657 aa21.24■□□□□ 0.99
TPM3-220ENST00000509601 MSCO60682 206 aa21.24■□□□□ 0.99
TPM3-220ENST00000509601 PPP4R3BQ5MIZ7 849 aa21.24■□□□□ 0.99
TPM3-220ENST00000509601 STAG1Q8WVM7 1258 aa21.24■□□□□ 0.99
TPM3-220ENST00000509601 CHMP4CQ96CF2 233 aa21.24■□□□□ 0.99
TPM3-220ENST00000509601 STX8Q9UNK0 236 aa21.24■□□□□ 0.99
TPM3-220ENST00000509601 ZMYM6O95789 1325 aa21.24■□□□□ 0.99
TPM3-220ENST00000509601 SMCHD1A6NHR9 2005 aa21.23■□□□□ 0.99
TPM3-220ENST00000509601 PLA2G6O60733 806 aa21.23■□□□□ 0.99
TPM3-220ENST00000509601 HAND2P61296 217 aa21.23■□□□□ 0.99
TPM3-220ENST00000509601 RCSD1Q6JBY9 416 aa21.23■□□□□ 0.99
TPM3-220ENST00000509601 CWC27Q6UX04 472 aaKnown RBP21.23■□□□□ 0.99
TPM3-220ENST00000509601 TINF2Q9BSI4 451 aa21.23■□□□□ 0.99
TPM3-220ENST00000509601 TCP11L1Q9NUJ3 509 aa21.23■□□□□ 0.99
TPM3-220ENST00000509601 RBM27Q9P2N5 1060 aaKnown RBP21.23■□□□□ 0.99
TPM3-220ENST00000509601 SEPT4O43236 478 aa21.22■□□□□ 0.99
TPM3-220ENST00000509601 SLC1A4P43007 532 aa21.22■□□□□ 0.99
TPM3-220ENST00000509601 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.22■□□□□ 0.99
TPM3-220ENST00000509601 CHURC1Q8WUH1 139 aa21.22■□□□□ 0.99
TPM3-220ENST00000509601 DNAJC25-GNG10A0A024R161 153 aa21.21■□□□□ 0.99
TPM3-220ENST00000509601 FDX1P10109 184 aa21.21■□□□□ 0.99
TPM3-220ENST00000509601 SLC4A3P48751 1232 aa21.21■□□□□ 0.99
TPM3-220ENST00000509601 FXR1P51114 621 aaKnown RBP eCLIP21.21■□□□□ 0.99
TPM3-220ENST00000509601 OAZ1P54368 228 aa21.21■□□□□ 0.99
TPM3-220ENST00000509601 RRP12Q5JTH9 1297 aaKnown RBP21.21■□□□□ 0.99
TPM3-220ENST00000509601 ANO1Q5XXA6 986 aa21.21■□□□□ 0.99
TPM3-220ENST00000509601 KCTD1Q719H9 257 aa21.21■□□□□ 0.99
TPM3-220ENST00000509601 RASGRP2Q7LDG7 609 aa21.21■□□□□ 0.99
TPM3-220ENST00000509601 C7orf61Q8IZ16 206 aa21.21■□□□□ 0.99
TPM3-220ENST00000509601 ZNF536O15090 1300 aa21.21■□□□□ 0.99
TPM3-220ENST00000509601 DNAH12Q6ZR08 3092 aa21.2■□□□□ 0.99
TPM3-220ENST00000509601 TAL1P17542 331 aaPredicted RBP21.2■□□□□ 0.98
TPM3-220ENST00000509601 STAT2P52630 851 aa21.2■□□□□ 0.98
TPM3-220ENST00000509601 MFAP1P55081 439 aaKnown RBP21.2■□□□□ 0.98
TPM3-220ENST00000509601 AKNAD1Q5T1N1 836 aa21.2■□□□□ 0.98
TPM3-220ENST00000509601 FAM160B2Q86V87 743 aa21.2■□□□□ 0.98
TPM3-220ENST00000509601 TBC1D10CQ8IV04 446 aa21.2■□□□□ 0.98
TPM3-220ENST00000509601 TMEM47Q9BQJ4 181 aa21.2■□□□□ 0.98
TPM3-220ENST00000509601 TOMM22Q9NS69 142 aa21.2■□□□□ 0.98
TPM3-220ENST00000509601 NRBP1Q9UHY1 535 aa21.2■□□□□ 0.98
TPM3-220ENST00000509601 CTDP1Q9Y5B0 961 aaPredicted RBP21.2■□□□□ 0.98
TPM3-220ENST00000509601 ZNF865P0CJ78 1059 aaPredicted RBP21.19■□□□□ 0.98
TPM3-220ENST00000509601 LRRC26Q2I0M4 334 aa21.19■□□□□ 0.98
TPM3-220ENST00000509601 GJC2Q5T442 439 aaPredicted RBP21.19■□□□□ 0.98
TPM3-220ENST00000509601 MFSD6Q6ZSS7 791 aa21.19■□□□□ 0.98
TPM3-220ENST00000509601 CHST13Q8NET6 341 aa21.19■□□□□ 0.98
TPM3-220ENST00000509601 DDX11Q96FC9 970 aa21.19■□□□□ 0.98
TPM3-220ENST00000509601 AGBL1Q96MI9 1066 aa21.19■□□□□ 0.98
TPM3-220ENST00000509601 SENP6Q9GZR1 1112 aaPredicted RBP21.19■□□□□ 0.98
TPM3-220ENST00000509601 DIAPH3Q9NSV4 1193 aa21.19■□□□□ 0.98
TPM3-220ENST00000509601 FRMPD3Q5JV73 1810 aa21.18■□□□□ 0.98
TPM3-220ENST00000509601 HIP1O00291 1037 aa21.18■□□□□ 0.98
TPM3-220ENST00000509601 DNM1LO00429 736 aa21.18■□□□□ 0.98
TPM3-220ENST00000509601 SNAI1O95863 264 aaPredicted RBP21.18■□□□□ 0.98
TPM3-220ENST00000509601 TOP1P11387 765 aaKnown RBP21.18■□□□□ 0.98
TPM3-220ENST00000509601 MAMDC4Q6UXC1 1216 aa21.18■□□□□ 0.98
TPM3-220ENST00000509601 ARRDC4Q8NCT1 418 aa21.18■□□□□ 0.98
TPM3-220ENST00000509601 IL25Q9H293 177 aa21.18■□□□□ 0.98
TPM3-220ENST00000509601 PRR12Q9ULL5 1215 aa21.18■□□□□ 0.98
TPM3-220ENST00000509601 ZMYND8Q9ULU4 1186 aaPredicted RBP21.18■□□□□ 0.98
TPM3-220ENST00000509601 SZT2Q5T011 3432 aa21.18■□□□□ 0.98
TPM3-220ENST00000509601 PLXNA1Q9UIW2 1896 aa21.18■□□□□ 0.98
TPM3-220ENST00000509601 ZNF213O14771 459 aa21.17■□□□□ 0.98
TPM3-220ENST00000509601 PCP11498 1178 aaKnown RBP21.17■□□□□ 0.98
TPM3-220ENST00000509601 GSPT1P15170 499 aaKnown RBP21.17■□□□□ 0.98
TPM3-220ENST00000509601 SNAP25P60880 206 aa21.17■□□□□ 0.98
TPM3-220ENST00000509601 TTBK2Q6IQ55 1244 aa21.17■□□□□ 0.98
TPM3-220ENST00000509601 MSL3Q8N5Y2 521 aaKnown RBP21.17■□□□□ 0.98
TPM3-220ENST00000509601 DCAF4Q8WV16 495 aa21.17■□□□□ 0.98
TPM3-220ENST00000509601 FGD4Q96M96 766 aa21.17■□□□□ 0.98
TPM3-220ENST00000509601 TTC14Q96N46 770 aa21.17■□□□□ 0.98
TPM3-220ENST00000509601 FBXO40Q9UH90 709 aa21.17■□□□□ 0.98
TPM3-220ENST00000509601 ISY1Q9ULR0 285 aaKnown RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms