RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 TOP1P11387 765 aaKnown RBP11.76□□□□□ -0.53
NUP54-203ENST00000504173 ANTXR2P58335 489 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 WTAPQ15007 396 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 TMEM67Q5HYA8 995 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 SH3D19Q5HYK7 790 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 IFIT1BQ5T764 474 aaKnown RBP11.76□□□□□ -0.53
NUP54-203ENST00000504173 FASTKD5Q7L8L6 764 aaKnown RBP11.76□□□□□ -0.53
NUP54-203ENST00000504173 DGKHQ86XP1 1220 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 ENAHQ8N8S7 591 aaPredicted RBP11.76□□□□□ -0.53
NUP54-203ENST00000504173 TMEM87BQ96K49 555 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 TTC14Q96N46 770 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 SEMA6BQ9H3T3 888 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 VCPKMTQ9H867 229 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 GOPCQ9HD26 462 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 PTPRFP10586 1907 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 MYH4Q9Y623 1939 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 ECM2O94769 699 aaPredicted RBP11.75□□□□□ -0.53
NUP54-203ENST00000504173 CPA1P15085 419 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 NOVP48745 357 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 PRKCZQ05513 592 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 COL9A3Q14050 684 aaPredicted RBP11.75□□□□□ -0.53
NUP54-203ENST00000504173 SEC23AQ15436 765 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 RCSD1Q6JBY9 416 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 PROCA1Q8NCQ7 364 aaPredicted RBP11.75□□□□□ -0.53
NUP54-203ENST00000504173 PXYLP1Q8TE99 480 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 ANKS1AQ92625 1134 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 MKL1Q969V6 931 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 C12orf42Q96LP6 360 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 TCEANC2Q96MN5 208 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 TMEM47Q9BQJ4 181 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 MTA3Q9BTC8 594 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 LRRC2Q9BYS8 371 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 TM6SF1Q9BZW5 370 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 KAT14Q9H8E8 782 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 EMILIN3Q9NT22 766 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 SYNPO2Q9UMS6 1093 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 CYP46A1Q9Y6A2 500 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 WDR19Q8NEZ3 1342 aa11.75□□□□□ -0.53
NUP54-203ENST00000504173 F5H6K3 240 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 SH2B2O14492 632 aaPredicted RBP11.74□□□□□ -0.53
NUP54-203ENST00000504173 INHAP05111 366 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 VCAM1P19320 739 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 RPS6KB1P23443 525 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 RBM25P49756 843 aaKnown RBP11.74□□□□□ -0.53
NUP54-203ENST00000504173 FGD1P98174 961 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 EXOSC10Q01780 885 aaKnown RBP11.74□□□□□ -0.53
NUP54-203ENST00000504173 KLRC3Q07444 240 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 NFXL1Q6ZNB6 911 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 SPICE1Q8N0Z3 855 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 PNMA1Q8ND90 353 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 GMCL1P1Q8NEA9 526 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 IGDCC4Q8TDY8 1250 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 LPAR1Q92633 364 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 C1QTNF1Q9BXJ1 281 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 UPF3BQ9BZI7 483 aaKnown RBP11.74□□□□□ -0.53
NUP54-203ENST00000504173 ZSWIM6Q9HCJ5 1215 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 AGTPBP1Q9UPW5 1226 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 MTMR7Q9Y216 660 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 LOC285556D6RIA3 1793 aa11.74□□□□□ -0.53
NUP54-203ENST00000504173 WDR46O15213 610 aaKnown RBP11.73□□□□□ -0.53
NUP54-203ENST00000504173 ADCY3O60266 1144 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 NDUFB10O96000 172 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 FOSL2P15408 326 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 PABPC4Q13310 644 aaKnown RBP eCLIP11.73□□□□□ -0.53
NUP54-203ENST00000504173 MOGSQ13724 837 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 KIAA1755Q5JYT7 1200 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 TREML2Q5T2D2 321 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 SLFN13Q68D06 897 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 GPAT2Q6NUI2 795 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 Q6ZUG5 572 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 RUFY3Q7L099 469 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 ANKRD23Q86SG2 305 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 MYLIPQ8WY64 445 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 CHMP4CQ96CF2 233 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 IL17RAQ96F46 866 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 TBC1D32Q96NH3 1257 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 LY9Q9HBG7 655 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 GPHNQ9NQX3 736 aaPredicted RBP11.73□□□□□ -0.53
NUP54-203ENST00000504173 CPA4Q9UI42 421 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 ISY1Q9ULR0 285 aaKnown RBP11.73□□□□□ -0.53
NUP54-203ENST00000504173 HCN4Q9Y3Q4 1203 aa11.73□□□□□ -0.53
NUP54-203ENST00000504173 CCDC69A6NI79 296 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 LIFRP42702 1097 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 SLC1A4P43007 532 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 FCGRTP55899 365 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 IRF5Q13568 498 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 CCDC96Q2M329 555 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 FAM83BQ5T0W9 1011 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 CATIPQ7Z7H3 387 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 TMTC2Q8N394 836 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 DCAF4Q8WV16 495 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 NUP88Q99567 741 aaPredicted RBP11.72□□□□□ -0.53
NUP54-203ENST00000504173 TANGO6Q9C0B7 1094 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 RPAP3Q9H6T3 665 aaPredicted RBP11.72□□□□□ -0.53
NUP54-203ENST00000504173 SENP2Q9HC62 589 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 PDRG1Q9NUG6 133 aa11.72□□□□□ -0.53
NUP54-203ENST00000504173 USP17L15C9J2P7 530 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 USP17L13C9JLJ4 530 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 USP17L11C9JVI0 530 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 USP17L18D6R9N7 530 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms