RNA–Protein interactions for RNA: ENST00000498534.5

CNOT4-211, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 2

Gene CNOT4, Length 481 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-211ENST00000498534 SLC4A3P48751 1232 aa14.37□□□□□ -0.11
CNOT4-211ENST00000498534 TDO2P48775 406 aa14.37□□□□□ -0.11
CNOT4-211ENST00000498534 SNX17Q15036 470 aa14.37□□□□□ -0.11
CNOT4-211ENST00000498534 TRIM60Q495X7 471 aa14.37□□□□□ -0.11
CNOT4-211ENST00000498534 C20orf194Q5TEA3 1177 aa14.37□□□□□ -0.11
CNOT4-211ENST00000498534 C1orf53Q5VUE5 145 aa14.37□□□□□ -0.11
CNOT4-211ENST00000498534 CLIP2Q9UDT6 1046 aa14.37□□□□□ -0.11
CNOT4-211ENST00000498534 TACC3Q9Y6A5 838 aa14.37□□□□□ -0.11
CNOT4-211ENST00000498534 A0A0G2JMZ2 1700 aa14.37□□□□□ -0.11
CNOT4-211ENST00000498534 SMCHD1A6NHR9 2005 aa14.37□□□□□ -0.11
CNOT4-211ENST00000498534 AKR1A1P14550 325 aa14.36□□□□□ -0.11
CNOT4-211ENST00000498534 TLE2Q04725 743 aa14.36□□□□□ -0.11
CNOT4-211ENST00000498534 SNRNP48Q6IEG0 339 aaKnown RBP14.36□□□□□ -0.11
CNOT4-211ENST00000498534 MSL3Q8N5Y2 521 aaKnown RBP14.36□□□□□ -0.11
CNOT4-211ENST00000498534 REPS2Q8NFH8 660 aa14.36□□□□□ -0.11
CNOT4-211ENST00000498534 BADQ92934 168 aa14.36□□□□□ -0.11
CNOT4-211ENST00000498534 OSBP2Q969R2 916 aa14.36□□□□□ -0.11
CNOT4-211ENST00000498534 NUP88Q99567 741 aaPredicted RBP14.36□□□□□ -0.11
CNOT4-211ENST00000498534 NACAP1Q9BZK3 213 aa14.36□□□□□ -0.11
CNOT4-211ENST00000498534 PHF24Q9UPV7 400 aa14.36□□□□□ -0.11
CNOT4-211ENST00000498534 PATL2C9JE40 543 aaKnown RBP14.35□□□□□ -0.11
CNOT4-211ENST00000498534 GPAA1O43292 621 aa14.35□□□□□ -0.11
CNOT4-211ENST00000498534 NDUFB10O96000 172 aa14.35□□□□□ -0.11
CNOT4-211ENST00000498534 PGK1P00558 417 aa14.35□□□□□ -0.11
CNOT4-211ENST00000498534 SLC3A2P08195 630 aaKnown RBP14.35□□□□□ -0.11
CNOT4-211ENST00000498534 TAL1P17542 331 aaPredicted RBP14.35□□□□□ -0.11
CNOT4-211ENST00000498534 SHHQ15465 462 aa14.35□□□□□ -0.11
CNOT4-211ENST00000498534 CPXCR1Q8N123 301 aa14.35□□□□□ -0.11
CNOT4-211ENST00000498534 MKL1Q969V6 931 aa14.35□□□□□ -0.11
CNOT4-211ENST00000498534 KIFC2Q96AC6 838 aa14.35□□□□□ -0.11
CNOT4-211ENST00000498534 FEM1BQ9UK73 627 aa14.35□□□□□ -0.11
CNOT4-211ENST00000498534 FAM184BQ9ULE4 1060 aa14.35□□□□□ -0.11
CNOT4-211ENST00000498534 LAMA2P24043 3122 aaKnown RBP14.35□□□□□ -0.11
CNOT4-211ENST00000498534 COL11A1P12107 1806 aaPredicted RBP14.34□□□□□ -0.11
CNOT4-211ENST00000498534 ATP2A1O14983 1001 aa14.34□□□□□ -0.11
CNOT4-211ENST00000498534 ERC2O15083 957 aa14.34□□□□□ -0.11
CNOT4-211ENST00000498534 ZNF865P0CJ78 1059 aaPredicted RBP14.34□□□□□ -0.11
CNOT4-211ENST00000498534 ZNF697Q5TEC3 545 aa14.34□□□□□ -0.11
CNOT4-211ENST00000498534 IFNL3Q8IZI9 196 aa14.34□□□□□ -0.11
CNOT4-211ENST00000498534 ANKRD35Q8N283 1001 aa14.34□□□□□ -0.11
CNOT4-211ENST00000498534 NUP133Q8WUM0 1156 aa14.34□□□□□ -0.11
CNOT4-211ENST00000498534 FAM161BQ96MY7 647 aa14.34□□□□□ -0.11
CNOT4-211ENST00000498534 TSEN34Q9BSV6 310 aaKnown RBP14.34□□□□□ -0.11
CNOT4-211ENST00000498534 PDLIM7Q9NR12 457 aa14.34□□□□□ -0.11
CNOT4-211ENST00000498534 SYNPO2Q9UMS6 1093 aa14.34□□□□□ -0.11
CNOT4-211ENST00000498534 PARP14Q460N5 1801 aa14.34□□□□□ -0.11
CNOT4-211ENST00000498534 CUL9Q8IWT3 2517 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 TRIM43BA6NCK2 446 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 TTLL1O95922 423 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 CLTBP09497 229 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 RAG1P15918 1043 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 PDE4BQ07343 736 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 TSHZ3Q63HK5 1081 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 MAMDC4Q6UXC1 1216 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 SH3RF1Q7Z6J0 888 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 TRIM43Q96BQ3 446 aaPredicted RBP14.33□□□□□ -0.12
CNOT4-211ENST00000498534 MTMR4Q9NYA4 1195 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 FBXO40Q9UH90 709 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 FARP1Q9Y4F1 1045 aaPredicted RBP14.33□□□□□ -0.12
CNOT4-211ENST00000498534 RIPK3Q9Y572 518 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 SYNGAP1Q96PV0 1343 aa14.33□□□□□ -0.12
CNOT4-211ENST00000498534 PLXNA1Q9UIW2 1896 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 DNAJC25-GNG10A0A024R161 153 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 IGKV6D-41A0A0C4DH26 115 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 A0A1W2PQ45 241 aaPredicted RBP14.32□□□□□ -0.12
CNOT4-211ENST00000498534 A0A1W2PQY0 241 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 DCDC2CA8MYV0 355 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 PQBP1O60828 265 aaKnown RBP14.32□□□□□ -0.12
CNOT4-211ENST00000498534 PRDM1O75626 825 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 TSPY3P0CV98 308 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 TSPY8P0CW00 308 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 FDX1P10109 184 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 ACLYP53396 1101 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 C9orf50Q5SZB4 431 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 ZNF467Q7Z7K2 595 aaPredicted RBP14.32□□□□□ -0.12
CNOT4-211ENST00000498534 CHST13Q8NET6 341 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 CEP95Q96GE4 821 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 SPC25Q9HBM1 224 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 SLC38A10Q9HBR0 1119 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 RAVER2Q9HCJ3 691 aaKnown RBP14.32□□□□□ -0.12
CNOT4-211ENST00000498534 TMEM39AQ9NV64 488 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 ZHX1Q9UKY1 873 aaPredicted RBP14.32□□□□□ -0.12
CNOT4-211ENST00000498534 TTC41PQ6P2S7 1318 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 ROBO3Q96MS0 1386 aa14.32□□□□□ -0.12
CNOT4-211ENST00000498534 MOXD2PA6NHM9 499 aa14.31□□□□□ -0.12
CNOT4-211ENST00000498534 M0R2C6 588 aa14.31□□□□□ -0.12
CNOT4-211ENST00000498534 KIAA0355O15063 1070 aa14.31□□□□□ -0.12
CNOT4-211ENST00000498534 DUSP11O75319 330 aaKnown RBP14.31□□□□□ -0.12
CNOT4-211ENST00000498534 SNAI1O95863 264 aaPredicted RBP14.31□□□□□ -0.12
CNOT4-211ENST00000498534 BMP3P12645 472 aa14.31□□□□□ -0.12
CNOT4-211ENST00000498534 OAZ1P54368 228 aa14.31□□□□□ -0.12
CNOT4-211ENST00000498534 SMAD3P84022 425 aaKnown RBP14.31□□□□□ -0.12
CNOT4-211ENST00000498534 ACVR2BQ13705 512 aa14.31□□□□□ -0.12
CNOT4-211ENST00000498534 KCNA10Q16322 511 aa14.31□□□□□ -0.12
CNOT4-211ENST00000498534 PPP4R3BQ5MIZ7 849 aa14.31□□□□□ -0.12
CNOT4-211ENST00000498534 SLFN13Q68D06 897 aa14.31□□□□□ -0.12
CNOT4-211ENST00000498534 GMCL1P1Q8NEA9 526 aa14.31□□□□□ -0.12
CNOT4-211ENST00000498534 NEDD1Q8NHV4 660 aa14.31□□□□□ -0.12
CNOT4-211ENST00000498534 CHURC1Q8WUH1 139 aa14.31□□□□□ -0.12
CNOT4-211ENST00000498534 VTI1AQ96AJ9 217 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms