RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CCDC85BQ15834 202 aaPredicted RBP5.85□□□□□ -1.47
USP54-217ENST00000498213 PCNX4Q63HM2 1172 aa5.85□□□□□ -1.47
USP54-217ENST00000498213 NFXL1Q6ZNB6 911 aa5.85□□□□□ -1.47
USP54-217ENST00000498213 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.85□□□□□ -1.47
USP54-217ENST00000498213 GRIN3AQ8TCU5 1115 aa5.85□□□□□ -1.47
USP54-217ENST00000498213 KRTAP4-9Q9BYQ8 210 aa5.85□□□□□ -1.47
USP54-217ENST00000498213 BSDC1Q9NW68 430 aaPredicted RBP5.85□□□□□ -1.47
USP54-217ENST00000498213 CD2APQ9Y5K6 639 aa5.85□□□□□ -1.47
USP54-217ENST00000498213 KIAA1210Q9ULL0 1709 aa5.85□□□□□ -1.47
USP54-217ENST00000498213 TULP4Q9NRJ4 1543 aa5.84□□□□□ -1.47
USP54-217ENST00000498213 PRAG1Q86YV5 1406 aa5.84□□□□□ -1.47
USP54-217ENST00000498213 PSMD2Q13200 908 aa5.84□□□□□ -1.47
USP54-217ENST00000498213 ZC3H12AQ5D1E8 599 aaKnown RBP5.84□□□□□ -1.47
USP54-217ENST00000498213 OGFOD3Q6PK18 319 aa5.84□□□□□ -1.47
USP54-217ENST00000498213 SV2BQ7L1I2 683 aa5.84□□□□□ -1.47
USP54-217ENST00000498213 CDC37L1Q7L3B6 337 aa5.84□□□□□ -1.47
USP54-217ENST00000498213 RNF214Q8ND24 703 aa5.84□□□□□ -1.47
USP54-217ENST00000498213 GATA6Q92908 595 aa5.84□□□□□ -1.47
USP54-217ENST00000498213 HIRIP3Q9BW71 556 aaPredicted RBP5.84□□□□□ -1.47
USP54-217ENST00000498213 C1GALT1Q9NS00 363 aa5.84□□□□□ -1.47
USP54-217ENST00000498213 CYP8B1Q9UNU6 501 aa5.84□□□□□ -1.47
USP54-217ENST00000498213 THRAP3Q9Y2W1 955 aaKnown RBP5.84□□□□□ -1.47
USP54-217ENST00000498213 PCDHGC5Q9Y5F6 944 aa5.84□□□□□ -1.47
USP54-217ENST00000498213 CSADQ9Y600 493 aa5.84□□□□□ -1.47
USP54-217ENST00000498213 RGPD3A6NKT7 1758 aaPredicted RBP5.83□□□□□ -1.48
USP54-217ENST00000498213 RGPD4Q7Z3J3 1758 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 ZBTB7CA1YPR0 619 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 DCDC2CA8MYV0 355 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 C8AP07357 584 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 JUNBP17275 347 aaPredicted RBP5.83□□□□□ -1.48
USP54-217ENST00000498213 BMP6P22004 513 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 CCDC27Q2M243 656 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 DIEXFQ68CQ4 756 aaKnown RBP5.83□□□□□ -1.48
USP54-217ENST00000498213 SCARA3Q6AZY7 606 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 TTBK2Q6IQ55 1244 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 POU5F2Q8N7G0 328 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 FLCNQ8NFG4 579 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 ANKRD24Q8TF21 1146 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 ISL2Q96A47 359 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 AK5Q9Y6K8 562 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 PHRF1Q9P1Y6 1649 aaKnown RBP5.83□□□□□ -1.48
USP54-217ENST00000498213 ATP7BP35670 1465 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 NRXN1Q9ULB1 1477 aa5.83□□□□□ -1.48
USP54-217ENST00000498213 ARHGEF28Q8N1W1 1705 aaKnown RBP5.82□□□□□ -1.48
USP54-217ENST00000498213 PRAMEF27A3QJZ7 478 aa5.82□□□□□ -1.48
USP54-217ENST00000498213 NEFMP07197 916 aa5.82□□□□□ -1.48
USP54-217ENST00000498213 ITGB5P18084 799 aa5.82□□□□□ -1.48
USP54-217ENST00000498213 ITGAEP38570 1179 aa5.82□□□□□ -1.48
USP54-217ENST00000498213 PPM1JQ5JR12 505 aa5.82□□□□□ -1.48
USP54-217ENST00000498213 SEZ6L2Q6UXD5 910 aa5.82□□□□□ -1.48
USP54-217ENST00000498213 MPRIPQ6WCQ1 1025 aa5.82□□□□□ -1.48
USP54-217ENST00000498213 C12orf40Q86WS4 652 aa5.82□□□□□ -1.48
USP54-217ENST00000498213 AGBL5Q8NDL9 886 aa5.82□□□□□ -1.48
USP54-217ENST00000498213 GZF1Q9H116 711 aaPredicted RBP5.82□□□□□ -1.48
USP54-217ENST00000498213 MRS2Q9HD23 443 aa5.82□□□□□ -1.48
USP54-217ENST00000498213 PEAK1Q9H792 1746 aa5.82□□□□□ -1.48
USP54-217ENST00000498213 KIF1AQ12756 1690 aa5.82□□□□□ -1.48
USP54-217ENST00000498213 GPRASP1Q5JY77 1395 aa5.81□□□□□ -1.48
USP54-217ENST00000498213 HSPA8P11142 646 aaKnown RBP5.81□□□□□ -1.48
USP54-217ENST00000498213 SAFB2Q14151 953 aaKnown RBP eCLIP5.81□□□□□ -1.48
USP54-217ENST00000498213 MAP3K11Q16584 847 aa5.81□□□□□ -1.48
USP54-217ENST00000498213 C9orf131Q5VYM1 1079 aa5.81□□□□□ -1.48
USP54-217ENST00000498213 TMEM132EQ6IEE7 984 aa5.81□□□□□ -1.48
USP54-217ENST00000498213 HDXQ7Z353 690 aa5.81□□□□□ -1.48
USP54-217ENST00000498213 COL23A1Q86Y22 540 aaPredicted RBP5.81□□□□□ -1.48
USP54-217ENST00000498213 NPAS4Q8IUM7 802 aa5.81□□□□□ -1.48
USP54-217ENST00000498213 TOP6BLQ8N6T0 577 aa5.81□□□□□ -1.48
USP54-217ENST00000498213 KCT2Q8NC54 265 aa5.81□□□□□ -1.48
USP54-217ENST00000498213 BCL11AQ9H165 835 aa5.81□□□□□ -1.48
USP54-217ENST00000498213 PARP2Q9UGN5 583 aa5.81□□□□□ -1.48
USP54-217ENST00000498213 ZC3H7BQ9UGR2 993 aaKnown RBP5.81□□□□□ -1.48
USP54-217ENST00000498213 KDM2BQ8NHM5 1336 aa5.8□□□□□ -1.48
USP54-217ENST00000498213 KCPQ6ZWJ8 1503 aa5.8□□□□□ -1.48
USP54-217ENST00000498213 TOPAZ1Q8N9V7 1692 aa5.8□□□□□ -1.48
USP54-217ENST00000498213 FANCGO15287 622 aa5.8□□□□□ -1.48
USP54-217ENST00000498213 TOM1L2Q6ZVM7 507 aa5.8□□□□□ -1.48
USP54-217ENST00000498213 PAK6Q9NQU5 681 aaPredicted RBP5.8□□□□□ -1.48
USP54-217ENST00000498213 RPGRIP1LQ68CZ1 1315 aa5.79□□□□□ -1.48
USP54-217ENST00000498213 ERCC3P19447 782 aa5.79□□□□□ -1.48
USP54-217ENST00000498213 ZBTB37Q5TC79 503 aa5.79□□□□□ -1.48
USP54-217ENST00000498213 RASIP1Q5U651 963 aa5.79□□□□□ -1.48
USP54-217ENST00000498213 DNAJC14Q6Y2X3 702 aaPredicted RBP5.79□□□□□ -1.48
USP54-217ENST00000498213 SMIM5Q71RC9 77 aa5.79□□□□□ -1.48
USP54-217ENST00000498213 STK11IPQ8N1F8 1099 aa5.79□□□□□ -1.48
USP54-217ENST00000498213 FAM181AQ8N9Y4 354 aa5.79□□□□□ -1.48
USP54-217ENST00000498213 NGDNQ8NEJ9 315 aaKnown RBP5.79□□□□□ -1.48
USP54-217ENST00000498213 ZNF507Q8TCN5 953 aa5.79□□□□□ -1.48
USP54-217ENST00000498213 DUSP23Q9BVJ7 150 aa5.79□□□□□ -1.48
USP54-217ENST00000498213 CACNA2D2Q9NY47 1150 aa5.79□□□□□ -1.48
USP54-217ENST00000498213 SLC5A6Q9Y289 635 aa5.79□□□□□ -1.48
USP54-217ENST00000498213 TNRC18O15417 2968 aaPredicted RBP5.79□□□□□ -1.48
USP54-217ENST00000498213 SBF2Q86WG5 1849 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 PAPPAQ13219 1627 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 IQGAP3Q86VI3 1631 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 EXOC5O00471 708 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 LEFTY1O75610 366 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 RLBP1P12271 317 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 ITIH2P19823 946 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 ETF1P62495 437 aaKnown RBP5.78□□□□□ -1.48
USP54-217ENST00000498213 RPS26P62854 115 aaKnown RBP5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms