RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 MYPNQ86TC9 1320 aa25.31■■□□□ 1.64
C9orf3-222ENST00000496567 DHX16O60231 1041 aaKnown RBP25.31■■□□□ 1.64
C9orf3-222ENST00000496567 TTBK2Q6IQ55 1244 aa25.31■■□□□ 1.64
C9orf3-222ENST00000496567 RBM19Q9Y4C8 960 aaKnown RBP25.31■■□□□ 1.64
C9orf3-222ENST00000496567 ALDH1A1P00352 501 aa25.3■■□□□ 1.64
C9orf3-222ENST00000496567 SMARCA1P28370 1054 aa25.3■■□□□ 1.64
C9orf3-222ENST00000496567 CDC27P30260 824 aa25.3■■□□□ 1.64
C9orf3-222ENST00000496567 FAM217BQ9NTX9 383 aaPredicted RBP25.3■■□□□ 1.64
C9orf3-222ENST00000496567 FBXO28Q9NVF7 368 aa25.3■■□□□ 1.64
C9orf3-222ENST00000496567 PPP1R9AQ9ULJ8 1098 aa25.3■■□□□ 1.64
C9orf3-222ENST00000496567 LARGE1O95461 756 aa25.29■■□□□ 1.64
C9orf3-222ENST00000496567 DSG3P32926 999 aa25.29■■□□□ 1.64
C9orf3-222ENST00000496567 ADD1P35611 737 aaKnown RBP25.29■■□□□ 1.64
C9orf3-222ENST00000496567 SLC16A2P36021 539 aa25.29■■□□□ 1.64
C9orf3-222ENST00000496567 SYDE2Q5VT97 1194 aa25.29■■□□□ 1.64
C9orf3-222ENST00000496567 CPLX2Q6PUV4 134 aaKnown RBP25.29■■□□□ 1.64
C9orf3-222ENST00000496567 TMTC3Q6ZXV5 915 aa25.29■■□□□ 1.64
C9orf3-222ENST00000496567 KIFC2Q96AC6 838 aa25.29■■□□□ 1.64
C9orf3-222ENST00000496567 PARK7Q99497 189 aaKnown RBP25.29■■□□□ 1.64
C9orf3-222ENST00000496567 UBA5Q9GZZ9 404 aa25.29■■□□□ 1.64
C9orf3-222ENST00000496567 THSD7BQ9C0I4 1608 aa25.29■■□□□ 1.64
C9orf3-222ENST00000496567 CPLX1O14810 134 aa25.28■■□□□ 1.64
C9orf3-222ENST00000496567 FDX1P10109 184 aa25.28■■□□□ 1.64
C9orf3-222ENST00000496567 SCRN1Q12765 414 aa25.28■■□□□ 1.64
C9orf3-222ENST00000496567 SAMD1Q6SPF0 538 aaPredicted RBP25.28■■□□□ 1.64
C9orf3-222ENST00000496567 GTF3C6Q969F1 213 aa25.28■■□□□ 1.64
C9orf3-222ENST00000496567 NCOA5Q9HCD5 579 aaKnown RBP25.28■■□□□ 1.64
C9orf3-222ENST00000496567 PLEKHA8P1O95397 391 aa25.27■■□□□ 1.64
C9orf3-222ENST00000496567 HSCBQ8IWL3 235 aa25.27■■□□□ 1.64
C9orf3-222ENST00000496567 GTF3C2Q8WUA4 911 aaPredicted RBP25.27■■□□□ 1.64
C9orf3-222ENST00000496567 TMX3Q96JJ7 454 aa25.27■■□□□ 1.64
C9orf3-222ENST00000496567 P2RX7Q99572 595 aaKnown RBP25.27■■□□□ 1.64
C9orf3-222ENST00000496567 SPZ1Q9BXG8 430 aa25.27■■□□□ 1.64
C9orf3-222ENST00000496567 PRR12Q9ULL5 1215 aa25.27■■□□□ 1.64
C9orf3-222ENST00000496567 HERVK_113P62684 666 aa25.27■■□□□ 1.64
C9orf3-222ENST00000496567 TAF1CQ15572 869 aaPredicted RBP25.27■■□□□ 1.64
C9orf3-222ENST00000496567 LBX2Q6XYB7 198 aa25.27■■□□□ 1.64
C9orf3-222ENST00000496567 ADGRF4Q8IZF3 695 aa25.27■■□□□ 1.64
C9orf3-222ENST00000496567 SRBD1Q8N5C6 995 aaKnown RBP25.27■■□□□ 1.64
C9orf3-222ENST00000496567 NECAB1Q8N987 351 aa25.27■■□□□ 1.64
C9orf3-222ENST00000496567 SMCR8Q8TEV9 937 aaPredicted RBP25.27■■□□□ 1.64
C9orf3-222ENST00000496567 SPDYE16A6NNV3 312 aaPredicted RBP25.26■■□□□ 1.63
C9orf3-222ENST00000496567 CPVLQ9H3G5 476 aa25.26■■□□□ 1.63
C9orf3-222ENST00000496567 RIOX1Q9H6W3 641 aa25.26■■□□□ 1.63
C9orf3-222ENST00000496567 ADAMTS5Q9UNA0 930 aa25.26■■□□□ 1.63
C9orf3-222ENST00000496567 PARP14Q460N5 1801 aa25.25■■□□□ 1.63
C9orf3-222ENST00000496567 K7ELQ4 463 aaPredicted RBP25.25■■□□□ 1.63
C9orf3-222ENST00000496567 ZBED4O75132 1171 aa25.25■■□□□ 1.63
C9orf3-222ENST00000496567 CDKL5O76039 1030 aa25.25■■□□□ 1.63
C9orf3-222ENST00000496567 CYP2C8P10632 490 aa25.25■■□□□ 1.63
C9orf3-222ENST00000496567 NBPF11Q86T75 865 aa25.25■■□□□ 1.63
C9orf3-222ENST00000496567 CCDC82Q8N4S0 544 aa25.25■■□□□ 1.63
C9orf3-222ENST00000496567 MB21D1Q8N884 522 aa25.25■■□□□ 1.63
C9orf3-222ENST00000496567 ATG4CQ96DT6 458 aa25.25■■□□□ 1.63
C9orf3-222ENST00000496567 VAT1LQ9HCJ6 419 aa25.25■■□□□ 1.63
C9orf3-222ENST00000496567 CTDP1Q9Y5B0 961 aaPredicted RBP25.25■■□□□ 1.63
C9orf3-222ENST00000496567 RLFQ13129 1914 aa25.24■■□□□ 1.63
C9orf3-222ENST00000496567 VWA5AO00534 786 aa25.24■■□□□ 1.63
C9orf3-222ENST00000496567 IFNAR1P17181 557 aa25.24■■□□□ 1.63
C9orf3-222ENST00000496567 CMTR1Q8N1G2 835 aaKnown RBP25.24■■□□□ 1.63
C9orf3-222ENST00000496567 DNAJC5GQ8N7S2 189 aa25.24■■□□□ 1.63
C9orf3-222ENST00000496567 JMJD4Q9H9V9 463 aa25.24■■□□□ 1.63
C9orf3-222ENST00000496567 ZFYVE28Q9HCC9 887 aa25.24■■□□□ 1.63
C9orf3-222ENST00000496567 CA12O43570 354 aa25.23■■□□□ 1.63
C9orf3-222ENST00000496567 CYTH3O43739 400 aa25.23■■□□□ 1.63
C9orf3-222ENST00000496567 GCLCP48506 637 aaPredicted RBP25.23■■□□□ 1.63
C9orf3-222ENST00000496567 NTRK3Q16288 839 aa25.23■■□□□ 1.63
C9orf3-222ENST00000496567 CCDC83Q8IWF9 413 aa25.23■■□□□ 1.63
C9orf3-222ENST00000496567 SLC38A10Q9HBR0 1119 aa25.23■■□□□ 1.63
C9orf3-222ENST00000496567 FUT2Q10981 343 aa25.22■■□□□ 1.63
C9orf3-222ENST00000496567 RRP36Q96EU6 259 aaKnown RBP25.22■■□□□ 1.63
C9orf3-222ENST00000496567 RANBP17Q9H2T7 1088 aaKnown RBP25.22■■□□□ 1.63
C9orf3-222ENST00000496567 MAP2K1Q02750 393 aaPredicted RBP25.22■■□□□ 1.63
C9orf3-222ENST00000496567 SLC35G1Q2M3R5 365 aa25.22■■□□□ 1.63
C9orf3-222ENST00000496567 MTMR8Q96EF0 704 aa25.22■■□□□ 1.63
C9orf3-222ENST00000496567 LLPHQ9BRT6 129 aaKnown RBP25.22■■□□□ 1.63
C9orf3-222ENST00000496567 RBM27Q9P2N5 1060 aaKnown RBP25.22■■□□□ 1.63
C9orf3-222ENST00000496567 RABGAP1Q9Y3P9 1069 aa25.22■■□□□ 1.63
C9orf3-222ENST00000496567 CNTNAP5Q8WYK1 1306 aa25.22■■□□□ 1.63
C9orf3-222ENST00000496567 AKAP17AQ02040 695 aaKnown RBP25.21■■□□□ 1.63
C9orf3-222ENST00000496567 TRIM22Q8IYM9 498 aa25.21■■□□□ 1.63
C9orf3-222ENST00000496567 RNF26Q9BY78 433 aaPredicted RBP25.21■■□□□ 1.63
C9orf3-222ENST00000496567 SEC63Q9UGP8 760 aaKnown RBP25.21■■□□□ 1.63
C9orf3-222ENST00000496567 ZBTB5O15062 677 aa25.2■■□□□ 1.62
C9orf3-222ENST00000496567 TLR2O60603 784 aa25.2■■□□□ 1.62
C9orf3-222ENST00000496567 OAZ1P54368 228 aa25.2■■□□□ 1.62
C9orf3-222ENST00000496567 SSRP1Q08945 709 aaKnown RBP25.2■■□□□ 1.62
C9orf3-222ENST00000496567 CDC37Q16543 378 aaPredicted RBP25.2■■□□□ 1.62
C9orf3-222ENST00000496567 HOMER1Q86YM7 354 aa25.2■■□□□ 1.62
C9orf3-222ENST00000496567 PNMA2Q9UL42 364 aa25.2■■□□□ 1.62
C9orf3-222ENST00000496567 ST3GAL1Q11201 340 aa25.19■■□□□ 1.62
C9orf3-222ENST00000496567 CRHR2Q13324 411 aa25.19■■□□□ 1.62
C9orf3-222ENST00000496567 BECN1Q14457 450 aa25.19■■□□□ 1.62
C9orf3-222ENST00000496567 PHKBQ93100 1093 aa25.19■■□□□ 1.62
C9orf3-222ENST00000496567 PIGSQ96S52 555 aa25.19■■□□□ 1.62
C9orf3-222ENST00000496567 PAGR1Q9BTK6 254 aa25.19■■□□□ 1.62
C9orf3-222ENST00000496567 CFHR5Q9BXR6 569 aa25.19■■□□□ 1.62
C9orf3-222ENST00000496567 SLC26A6Q9BXS9 759 aa25.19■■□□□ 1.62
C9orf3-222ENST00000496567 RNF186Q9NXI6 227 aa25.19■■□□□ 1.62
C9orf3-222ENST00000496567 V9GY48 417 aaPredicted RBP25.19■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms