RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 MKL1Q969V6 931 aa12.6□□□□□ -0.39
NELFE-213ENST00000494956 KIFC2Q96AC6 838 aa12.6□□□□□ -0.39
NELFE-213ENST00000494956 ZNF287Q9HBT7 754 aa12.6□□□□□ -0.39
NELFE-213ENST00000494956 RAVER2Q9HCJ3 691 aaKnown RBP12.6□□□□□ -0.39
NELFE-213ENST00000494956 OGDHLQ9ULD0 1010 aa12.6□□□□□ -0.39
NELFE-213ENST00000494956 ISY1Q9ULR0 285 aaKnown RBP12.6□□□□□ -0.39
NELFE-213ENST00000494956 SMCHD1A6NHR9 2005 aa12.6□□□□□ -0.39
NELFE-213ENST00000494956 STRNO43815 780 aa12.59□□□□□ -0.39
NELFE-213ENST00000494956 GSPT1P15170 499 aaKnown RBP12.59□□□□□ -0.39
NELFE-213ENST00000494956 TAL1P17542 331 aaPredicted RBP12.59□□□□□ -0.39
NELFE-213ENST00000494956 MCCP23508 829 aa12.59□□□□□ -0.39
NELFE-213ENST00000494956 SNRNP48Q6IEG0 339 aaKnown RBP12.59□□□□□ -0.39
NELFE-213ENST00000494956 TBC1D10CQ8IV04 446 aa12.59□□□□□ -0.39
NELFE-213ENST00000494956 GMCL1P1Q8NEA9 526 aa12.59□□□□□ -0.39
NELFE-213ENST00000494956 HTATIP2Q9BUP3 242 aa12.59□□□□□ -0.39
NELFE-213ENST00000494956 MROH8Q9H579 483 aa12.59□□□□□ -0.39
NELFE-213ENST00000494956 ANAPC4Q9UJX5 808 aa12.59□□□□□ -0.39
NELFE-213ENST00000494956 STX8Q9UNK0 236 aa12.59□□□□□ -0.39
NELFE-213ENST00000494956 COLQQ9Y215 455 aaPredicted RBP12.59□□□□□ -0.39
NELFE-213ENST00000494956 PFASO15067 1338 aa12.59□□□□□ -0.39
NELFE-213ENST00000494956 TMEM232C9JQI7 657 aa12.58□□□□□ -0.4
NELFE-213ENST00000494956 FCER1AP12319 257 aa12.58□□□□□ -0.4
NELFE-213ENST00000494956 BMP3P12645 472 aa12.58□□□□□ -0.4
NELFE-213ENST00000494956 CYBAP13498 195 aa12.58□□□□□ -0.4
NELFE-213ENST00000494956 KCTD1Q719H9 257 aa12.58□□□□□ -0.4
NELFE-213ENST00000494956 NECAB2Q7Z6G3 386 aa12.58□□□□□ -0.4
NELFE-213ENST00000494956 MAML3Q96JK9 1138 aa12.58□□□□□ -0.4
NELFE-213ENST00000494956 MMP19Q99542 508 aa12.58□□□□□ -0.4
NELFE-213ENST00000494956 DIAPH3Q9NSV4 1193 aa12.58□□□□□ -0.4
NELFE-213ENST00000494956 MCM3APO60318 1980 aa12.58□□□□□ -0.4
NELFE-213ENST00000494956 LAMA4Q16363 1823 aa12.58□□□□□ -0.4
NELFE-213ENST00000494956 ORC4O43929 436 aa12.57□□□□□ -0.4
NELFE-213ENST00000494956 SLC25A27O95847 323 aa12.57□□□□□ -0.4
NELFE-213ENST00000494956 FGRP09769 529 aa12.57□□□□□ -0.4
NELFE-213ENST00000494956 HABP4Q5JVS0 413 aaKnown RBP12.57□□□□□ -0.4
NELFE-213ENST00000494956 OLFML2BQ68BL8 750 aa12.57□□□□□ -0.4
NELFE-213ENST00000494956 CHRDL2Q6WN34 429 aa12.57□□□□□ -0.4
NELFE-213ENST00000494956 PRPF38AQ8NAV1 312 aaKnown RBP12.57□□□□□ -0.4
NELFE-213ENST00000494956 C11orf49Q9H6J7 331 aa12.57□□□□□ -0.4
NELFE-213ENST00000494956 DDX20Q9UHI6 824 aaKnown RBP12.57□□□□□ -0.4
NELFE-213ENST00000494956 NEDD4P46934 1319 aa12.57□□□□□ -0.4
NELFE-213ENST00000494956 EVI5O60447 810 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 ZBED4O75132 1171 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 SLC1A4P43007 532 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 ZNF792Q3KQV3 632 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 TTC22Q5TAA0 569 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 TTBK2Q6IQ55 1244 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 SKAP1Q86WV1 359 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 C7orf61Q8IZ16 206 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 ABRAQ8N0Z2 381 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 ANKLE1Q8NAG6 615 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 AGBL1Q96MI9 1066 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 ZKSCAN3Q9BRR0 538 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 TEX13BQ9BXU2 312 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 SLC38A10Q9HBR0 1119 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 HOMER2Q9NSB8 354 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 FEM1BQ9UK73 627 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 ZMYND8Q9ULU4 1186 aaPredicted RBP12.56□□□□□ -0.4
NELFE-213ENST00000494956 CEP290O15078 2479 aa12.56□□□□□ -0.4
NELFE-213ENST00000494956 SLC34A2O95436 690 aa12.55□□□□□ -0.4
NELFE-213ENST00000494956 SYN1P17600 705 aa12.55□□□□□ -0.4
NELFE-213ENST00000494956 SLC16A2P36021 539 aa12.55□□□□□ -0.4
NELFE-213ENST00000494956 IKQ13123 557 aaPredicted RBP12.55□□□□□ -0.4
NELFE-213ENST00000494956 KCTD2Q14681 263 aa12.55□□□□□ -0.4
NELFE-213ENST00000494956 CCDC96Q2M329 555 aa12.55□□□□□ -0.4
NELFE-213ENST00000494956 AKNAD1Q5T1N1 836 aa12.55□□□□□ -0.4
NELFE-213ENST00000494956 CCDC174Q6PII3 467 aa12.55□□□□□ -0.4
NELFE-213ENST00000494956 LENG1Q96BZ8 264 aaPredicted RBP12.55□□□□□ -0.4
NELFE-213ENST00000494956 TMEM47Q9BQJ4 181 aa12.55□□□□□ -0.4
NELFE-213ENST00000494956 CTDP1Q9Y5B0 961 aaPredicted RBP12.55□□□□□ -0.4
NELFE-213ENST00000494956 DDX49Q9Y6V7 483 aaKnown RBP12.55□□□□□ -0.4
NELFE-213ENST00000494956 ZNF536O15090 1300 aa12.55□□□□□ -0.4
NELFE-213ENST00000494956 ZMYM6O95789 1325 aa12.55□□□□□ -0.4
NELFE-213ENST00000494956 FRMPD2Q68DX3 1309 aaPredicted RBP12.55□□□□□ -0.4
NELFE-213ENST00000494956 COL6A1P12109 1028 aa12.54□□□□□ -0.4
NELFE-213ENST00000494956 NOVP48745 357 aa12.54□□□□□ -0.4
NELFE-213ENST00000494956 STAT2P52630 851 aa12.54□□□□□ -0.4
NELFE-213ENST00000494956 LRRC26Q2I0M4 334 aa12.54□□□□□ -0.4
NELFE-213ENST00000494956 GJC2Q5T442 439 aaPredicted RBP12.54□□□□□ -0.4
NELFE-213ENST00000494956 RCSD1Q6JBY9 416 aa12.54□□□□□ -0.4
NELFE-213ENST00000494956 MFSD6Q6ZSS7 791 aa12.54□□□□□ -0.4
NELFE-213ENST00000494956 STAG1Q8WVM7 1258 aa12.54□□□□□ -0.4
NELFE-213ENST00000494956 GMCL1Q96IK5 515 aa12.54□□□□□ -0.4
NELFE-213ENST00000494956 FGD4Q96M96 766 aa12.54□□□□□ -0.4
NELFE-213ENST00000494956 GPCPD1Q9NPB8 672 aa12.54□□□□□ -0.4
NELFE-213ENST00000494956 SLC5A4Q9NY91 659 aa12.54□□□□□ -0.4
NELFE-213ENST00000494956 RBM27Q9P2N5 1060 aaKnown RBP12.54□□□□□ -0.4
NELFE-213ENST00000494956 SYNPO2Q9UMS6 1093 aa12.54□□□□□ -0.4
NELFE-213ENST00000494956 LCTP09848 1927 aa12.53□□□□□ -0.4
NELFE-213ENST00000494956 ATP2A1O14983 1001 aa12.53□□□□□ -0.4
NELFE-213ENST00000494956 ATN1P54259 1190 aaPredicted RBP12.53□□□□□ -0.4
NELFE-213ENST00000494956 CNTN2Q02246 1040 aa12.53□□□□□ -0.4
NELFE-213ENST00000494956 DDX11Q96FC9 970 aa12.53□□□□□ -0.4
NELFE-213ENST00000494956 TINF2Q9BSI4 451 aa12.53□□□□□ -0.4
NELFE-213ENST00000494956 SENP6Q9GZR1 1112 aaPredicted RBP12.53□□□□□ -0.4
NELFE-213ENST00000494956 PRR12Q9ULL5 1215 aa12.53□□□□□ -0.4
NELFE-213ENST00000494956 NR2E3Q9Y5X4 410 aa12.53□□□□□ -0.4
NELFE-213ENST00000494956 DNAJC25-GNG10A0A024R161 153 aa12.52□□□□□ -0.41
NELFE-213ENST00000494956 B4E1Z4 1266 aa12.52□□□□□ -0.41
NELFE-213ENST00000494956 ZNF213O14771 459 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 122.1 ms