RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 OTUD7AQ8TE49 926 aaPredicted RBP12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 RUFY2Q8WXA3 655 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 PRDM12Q9H4Q4 367 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 EPHX3Q9H6B9 360 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 TMOD4Q9NZQ9 345 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 MYH15Q9Y2K3 1946 aa12.38□□□□□ -0.43
PDLIM1-205ENST00000493949 ELP1O95163 1332 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 ZNFX1Q9P2E3 1918 aaKnown RBP12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 CLTBP09497 229 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 PTPREP23469 700 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 RHBDL3P58872 404 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 ATP2B2Q01814 1243 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 PICALMQ13492 652 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 GRB14Q14449 540 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 RASIP1Q5U651 963 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 SLF2Q8IX21 1173 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 SSH3Q8TE77 659 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 PBX4Q9BYU1 374 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 ANO2Q9NQ90 1003 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 DENND2AQ9ULE3 1009 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 RABGAP1Q9Y3P9 1069 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.37□□□□□ -0.439e-9■□□□□ 9.6
PDLIM1-205ENST00000493949 CDK5RAP2Q96SN8 1893 aa12.37□□□□□ -0.43
PDLIM1-205ENST00000493949 MYO5AQ9Y4I1 1855 aaKnown RBP12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 HIP1O00291 1037 aa12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 MAP4K4O95819 1239 aaPredicted RBP12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 RAG1P15918 1043 aa12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 CYP2C19P33261 490 aa12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 ADCYAP1R1P41586 468 aa12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 BTDP43251 543 aa12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 RFX5P48382 616 aaPredicted RBP12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 CCNA1P78396 465 aa12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 AAK1Q2M2I8 961 aa12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 NPLOC4Q8TAT6 608 aa12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 PAGR1Q9BTK6 254 aa12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 C11orf16Q9NQ32 467 aa12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 GNL3LQ9NVN8 582 aaKnown RBP12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 HERC5Q9UII4 1024 aaKnown RBP12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 LIMCH1Q9UPQ0 1083 aa12.36□□□□□ -0.43
PDLIM1-205ENST00000493949 PRRC2BQ5JSZ5 2229 aaKnown RBP12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 FOCADQ5VW36 1801 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 LRRC37A2A6NM11 1700 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 GPR75-ASB3A0A0A6YYF3 556 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 SGSM2O43147 1006 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 SEPT4O43236 478 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 SMARCA5O60264 1052 aaPredicted RBP12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 KDM4AO75164 1064 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 CNMDO75829 334 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 ASNSP08243 561 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 PDCP20941 246 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 PHKA1P46020 1223 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 NOLC1Q14978 699 aaKnown RBP eCLIP12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 LRRC41Q15345 812 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 CCDC85BQ15834 202 aaPredicted RBP12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 OLFML2BQ68BL8 750 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 ATG9AQ7Z3C6 839 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 KCNB2Q92953 911 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 KIF1BPQ96EK5 621 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 TTC14Q96N46 770 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 GTPBP4Q9BZE4 634 aaKnown RBP12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 GINM1Q9NU53 330 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 FAM13BQ9NYF5 915 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 PHF24Q9UPV7 400 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 MROH7-TTC4A0A0A0MT08 1334 aa12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 PDS5AQ29RF7 1337 aaKnown RBP12.35□□□□□ -0.43
PDLIM1-205ENST00000493949 WDFY4Q6ZS81 3184 aa12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 CACNA1AO00555 2505 aa12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 USP17L10C9JJH3 530 aa12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 STX6O43752 255 aa12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 ADORA1P30542 326 aa12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 PBX2P40425 430 aa12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 VPS53Q5VIR6 699 aa12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 LBX2Q6XYB7 198 aa12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 RASEFQ8IZ41 740 aa12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 TOX2Q96NM4 488 aa12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 SIL1Q9H173 461 aa12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 ALDH8A1Q9H2A2 487 aaPredicted RBP12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 KIF3AQ9Y496 699 aa12.34□□□□□ -0.43
PDLIM1-205ENST00000493949 TRIM6-TRIM34B2RNG4 842 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 EYA2O00167 538 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 F13A1P00488 732 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 UBTFL1P0CB47 393 aaPredicted RBP12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 CCDC192P0DO97 292 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 DHX8Q14562 1220 aaKnown RBP12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 SHROOM1Q2M3G4 852 aaPredicted RBP12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 ANKRD33Q7Z3H0 272 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 TICAM2Q86XR7 235 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 DZIP1Q86YF9 867 aaKnown RBP12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 ERC1Q8IUD2 1116 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 PDCL2Q8N4E4 241 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 FERMT2Q96AC1 680 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 GPATCH3Q96I76 525 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 C12orf42Q96LP6 360 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 FUCA2Q9BTY2 467 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 EMILIN3Q9NT22 766 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 BRWD1Q9NSI6 2320 aa12.33□□□□□ -0.44
PDLIM1-205ENST00000493949 TTLL13PA6NNM8 815 aa12.32□□□□□ -0.44
PDLIM1-205ENST00000493949 IGFBP4P22692 258 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms