RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 CCDC82Q8N4S0 544 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 CD99L2Q8TCZ2 262 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 UBA5Q9GZZ9 404 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 FBXO28Q9NVF7 368 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 MAD2L2Q9UI95 211 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 AGTPBP1Q9UPW5 1226 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 LOC285556D6RIA3 1793 aa20.02■□□□□ 0.8
LIME1-208ENST00000493265 USP17L15C9J2P7 530 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 USP17L13C9JLJ4 530 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 USP17L11C9JVI0 530 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 USP17L18D6R9N7 530 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 USP17L22D6RA61 530 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 USP17L17D6RBQ6 530 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 USP17L19D6RCP7 530 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 USP17L20D6RJB6 530 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 DHX16O60231 1041 aaKnown RBP20.01■□□□□ 0.79
LIME1-208ENST00000493265 FLOT1O75955 427 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 SNHG28P0DPA3 235 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 EVCP57679 992 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 USP17L24Q0WX57 530 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 ASPRV1Q53RT3 343 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 PTPN18Q99952 460 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 TSHZ2Q9NRE2 1034 aa20.01■□□□□ 0.79
LIME1-208ENST00000493265 RBBP6Q7Z6E9 1792 aaKnown RBP20■□□□□ 0.79
LIME1-208ENST00000493265 KLRF2D3W0D1 207 aa20■□□□□ 0.79
LIME1-208ENST00000493265 PDHXO00330 501 aa20■□□□□ 0.79
LIME1-208ENST00000493265 DTNBO60941 627 aa20■□□□□ 0.79
LIME1-208ENST00000493265 PPFIA3O75145 1194 aa20■□□□□ 0.79
LIME1-208ENST00000493265 PLEKHA8P1O95397 391 aa20■□□□□ 0.79
LIME1-208ENST00000493265 CDC27P30260 824 aa20■□□□□ 0.79
LIME1-208ENST00000493265 ADD1P35611 737 aaKnown RBP20■□□□□ 0.79
LIME1-208ENST00000493265 IRX3P78415 501 aaPredicted RBP20■□□□□ 0.79
LIME1-208ENST00000493265 GPATCH4Q5T3I0 446 aaKnown RBP20■□□□□ 0.79
LIME1-208ENST00000493265 OTUD7BQ6GQQ9 843 aa20■□□□□ 0.79
LIME1-208ENST00000493265 FAM43AQ8N2R8 423 aa20■□□□□ 0.79
LIME1-208ENST00000493265 PIBF1Q8WXW3 757 aa20■□□□□ 0.79
LIME1-208ENST00000493265 KIFC2Q96AC6 838 aa20■□□□□ 0.79
LIME1-208ENST00000493265 ERO1AQ96HE7 468 aa20■□□□□ 0.79
LIME1-208ENST00000493265 ZSCAN31Q96LW9 406 aaPredicted RBP20■□□□□ 0.79
LIME1-208ENST00000493265 VAT1LQ9HCJ6 419 aa20■□□□□ 0.79
LIME1-208ENST00000493265 POTEFA5A3E0 1075 aa19.99■□□□□ 0.79
LIME1-208ENST00000493265 PALM3A6NDB9 673 aaPredicted RBP19.99■□□□□ 0.79
LIME1-208ENST00000493265 PFKFB2O60825 505 aa19.99■□□□□ 0.79
LIME1-208ENST00000493265 MCM2P49736 904 aa19.99■□□□□ 0.79
LIME1-208ENST00000493265 STAT2P52630 851 aa19.99■□□□□ 0.79
LIME1-208ENST00000493265 SNAP25P60880 206 aa19.99■□□□□ 0.79
LIME1-208ENST00000493265 SCRN1Q12765 414 aa19.99■□□□□ 0.79
LIME1-208ENST00000493265 PABPC4Q13310 644 aaKnown RBP eCLIP19.99■□□□□ 0.79
LIME1-208ENST00000493265 CATSPERGQ6ZRH7 1159 aa19.99■□□□□ 0.79
LIME1-208ENST00000493265 CCDC83Q8IWF9 413 aa19.99■□□□□ 0.79
LIME1-208ENST00000493265 HSCBQ8IWL3 235 aa19.99■□□□□ 0.79
LIME1-208ENST00000493265 IL27Q8NEV9 243 aa19.99■□□□□ 0.79
LIME1-208ENST00000493265 MAP3K14Q99558 947 aa19.99■□□□□ 0.79
LIME1-208ENST00000493265 RBM28Q9NW13 759 aaKnown RBP19.99■□□□□ 0.79
LIME1-208ENST00000493265 FEM1BQ9UK73 627 aa19.99■□□□□ 0.79
LIME1-208ENST00000493265 CPLX1O14810 134 aa19.98■□□□□ 0.79
LIME1-208ENST00000493265 OSBPP22059 807 aa19.98■□□□□ 0.79
LIME1-208ENST00000493265 ANKRD23Q86SG2 305 aa19.98■□□□□ 0.79
LIME1-208ENST00000493265 NBPF11Q86T75 865 aa19.98■□□□□ 0.79
LIME1-208ENST00000493265 CHURC1Q8WUH1 139 aa19.98■□□□□ 0.79
LIME1-208ENST00000493265 TMX3Q96JJ7 454 aa19.98■□□□□ 0.79
LIME1-208ENST00000493265 SLF1Q9BQI6 1058 aa19.98■□□□□ 0.79
LIME1-208ENST00000493265 ASCC2Q9H1I8 757 aaPredicted RBP19.98■□□□□ 0.79
LIME1-208ENST00000493265 FAM217BQ9NTX9 383 aaPredicted RBP19.98■□□□□ 0.79
LIME1-208ENST00000493265 PTPN22Q9Y2R2 807 aa19.98■□□□□ 0.79
LIME1-208ENST00000493265 CCDC196A0A1B0GTZ2 297 aa19.97■□□□□ 0.79
LIME1-208ENST00000493265 TESPA1A2RU30 521 aaPredicted RBP19.97■□□□□ 0.79
LIME1-208ENST00000493265 CYP2C8P10632 490 aa19.97■□□□□ 0.79
LIME1-208ENST00000493265 GNAQP50148 359 aa19.97■□□□□ 0.79
LIME1-208ENST00000493265 RCAN1P53805 252 aa19.97■□□□□ 0.79
LIME1-208ENST00000493265 SYDE2Q5VT97 1194 aa19.97■□□□□ 0.79
LIME1-208ENST00000493265 TMTC3Q6ZXV5 915 aa19.97■□□□□ 0.79
LIME1-208ENST00000493265 FAM160B2Q86V87 743 aa19.97■□□□□ 0.79
LIME1-208ENST00000493265 SRBD1Q8N5C6 995 aaKnown RBP19.97■□□□□ 0.79
LIME1-208ENST00000493265 P2RX7Q99572 595 aaKnown RBP19.97■□□□□ 0.79
LIME1-208ENST00000493265 EFCC1Q9HA90 598 aa19.97■□□□□ 0.79
LIME1-208ENST00000493265 SH2B1Q9NRF2 756 aaPredicted RBP19.97■□□□□ 0.79
LIME1-208ENST00000493265 CENPFP49454 3210 aa19.97■□□□□ 0.79
LIME1-208ENST00000493265 HOXA7P31268 230 aaPredicted RBP19.96■□□□□ 0.79
LIME1-208ENST00000493265 CAP1Q01518 475 aa19.96■□□□□ 0.79
LIME1-208ENST00000493265 SP3Q02447 781 aa19.96■□□□□ 0.79
LIME1-208ENST00000493265 COG2Q14746 738 aa19.96■□□□□ 0.79
LIME1-208ENST00000493265 GTF3C6Q969F1 213 aa19.96■□□□□ 0.79
LIME1-208ENST00000493265 SNX21Q969T3 373 aa19.96■□□□□ 0.79
LIME1-208ENST00000493265 ATG4CQ96DT6 458 aa19.96■□□□□ 0.79
LIME1-208ENST00000493265 PRR12Q9ULL5 1215 aa19.96■□□□□ 0.79
LIME1-208ENST00000493265 CTDP1Q9Y5B0 961 aaPredicted RBP19.96■□□□□ 0.79
LIME1-208ENST00000493265 KIAA0100Q14667 2235 aaKnown RBP19.95■□□□□ 0.78
LIME1-208ENST00000493265 hCG_1642624A0A1W2PR95 340 aa19.95■□□□□ 0.78
LIME1-208ENST00000493265 K7ELQ4 463 aaPredicted RBP19.95■□□□□ 0.78
LIME1-208ENST00000493265 HOMER1Q86YM7 354 aa19.95■□□□□ 0.78
LIME1-208ENST00000493265 ADGRF4Q8IZF3 695 aa19.95■□□□□ 0.78
LIME1-208ENST00000493265 PRPF38AQ8NAV1 312 aaKnown RBP19.95■□□□□ 0.78
LIME1-208ENST00000493265 SMCR8Q8TEV9 937 aaPredicted RBP19.95■□□□□ 0.78
LIME1-208ENST00000493265 PHKBQ93100 1093 aa19.95■□□□□ 0.78
LIME1-208ENST00000493265 LZTS2Q9BRK4 669 aa19.95■□□□□ 0.78
LIME1-208ENST00000493265 PNMA3Q9UL41 463 aa19.95■□□□□ 0.78
LIME1-208ENST00000493265 PPP1R9AQ9ULJ8 1098 aa19.95■□□□□ 0.78
LIME1-208ENST00000493265 NID2Q14112 1375 aa19.95■□□□□ 0.78
LIME1-208ENST00000493265 DSG3P32926 999 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms