RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 TP53INP1Q96A56 240 aa8.34□□□□□ -1.07
PRPF40A-210ENST00000489741 KRTAP4-6Q9BYQ5 205 aa8.34□□□□□ -1.07
PRPF40A-210ENST00000489741 AKTIPQ9H8T0 292 aa8.34□□□□□ -1.07
PRPF40A-210ENST00000489741 ZFYVE28Q9HCC9 887 aa8.34□□□□□ -1.07
PRPF40A-210ENST00000489741 TSPYL4Q9UJ04 414 aa8.34□□□□□ -1.07
PRPF40A-210ENST00000489741 CNTNAP1P78357 1384 aa8.34□□□□□ -1.07
PRPF40A-210ENST00000489741 DICER1Q9UPY3 1922 aaKnown RBP8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 H3BRJ5 948 aa8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 CHL1O00533 1208 aa8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 POLR3DP05423 398 aaPredicted RBP8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 NEFLP07196 543 aa8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 CD68P34810 354 aaPredicted RBP8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 PPP1R42Q7Z4L9 355 aa8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 TIAM2Q8IVF5 1701 aa8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 CNTROBQ8N137 903 aa8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 TMEM102Q8N9M5 508 aaPredicted RBP8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 RBM17Q96I25 401 aaKnown RBP8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 RTFDC1Q9BY42 306 aaPredicted RBP8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 VPS33BQ9H267 617 aa8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 LATS2Q9NRM7 1088 aa8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 BIN2Q9UBW5 565 aaPredicted RBP8.33□□□□□ -1.08
PRPF40A-210ENST00000489741 RNF123Q5XPI4 1314 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 MAPK8IP3Q9UPT6 1336 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 CCDC88AQ3V6T2 1871 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 SOWAHDA6NJG2 315 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 EIF2S2P20042 333 aaKnown RBP8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 NKAPLQ5M9Q1 402 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 COPS6Q7L5N1 327 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 KLHL23Q8NBE8 558 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 ASAP3Q8TDY4 903 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 JDP2Q8WYK2 163 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 RPGRQ92834 1020 aaKnown RBP8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 UTP14AQ9BVJ6 771 aaKnown RBP8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 SEC31BQ9NQW1 1179 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 ATP6V0A2Q9Y487 856 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 COL4A5P29400 1685 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 ARFGEF2Q9Y6D5 1785 aa8.32□□□□□ -1.08
PRPF40A-210ENST00000489741 RASSF10A6NK89 507 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 F8W735 103 aaPredicted RBP8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 DYRK3O43781 588 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 BBOX1O75936 387 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 ALX3O95076 343 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 ANXA1P04083 346 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 EPS15P42566 896 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 EIF6P56537 245 aaKnown RBP8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 LMOD3Q0VAK6 560 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 TCIRG1Q13488 830 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 FOXD4L6Q3SYB3 417 aaPredicted RBP8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 EAPPQ56P03 285 aaPredicted RBP8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 MAP1SQ66K74 1059 aaPredicted RBP8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 FOXD4L3Q6VB84 417 aaPredicted RBP8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 ACAD11Q709F0 780 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 NLRP10Q86W26 655 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 SLC7A3Q8WY07 619 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 BSNDQ8WZ55 320 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 NXPE3Q969Y0 559 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 CITED4Q96RK1 184 aa8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 DDX21Q9NR30 783 aaKnown RBP eCLIP8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 GNEQ9Y223 722 aaKnown RBP8.31□□□□□ -1.08
PRPF40A-210ENST00000489741 KDM3BQ7LBC6 1761 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 FOXN1O15353 648 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 KRT24Q2M2I5 525 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 PEAR1Q5VY43 1037 aaPredicted RBP8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 SP8Q8IXZ3 490 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 AGGF1Q8N302 714 aaeCLIP8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 TMEM130Q8N3G9 435 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 XAGE3Q8WTP9 111 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 WNT8BQ93098 351 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 MEGF10Q96KG7 1140 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 FAM129BQ96TA1 746 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 SSBP4Q9BWG4 385 aaPredicted RBP8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 PRDM10Q9NQV6 1147 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 PGAP2Q9UHJ9 254 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 SOX13Q9UN79 622 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 ADAMTSL1Q8N6G6 1762 aa8.3□□□□□ -1.08
PRPF40A-210ENST00000489741 ABCC4O15439 1325 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 SCN4AP35499 1836 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 WISP1O95388 367 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 HOXB7P09629 217 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 HCLS1P14317 486 aaPredicted RBP8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 GLB1P16278 677 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 ARL4DP49703 201 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 CXCL9Q07325 125 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 AOC3Q16853 763 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 DUOXA2Q1HG44 320 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 DEFB115Q30KQ5 88 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 HSP90AB3PQ58FF7 597 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 CST9Q5W186 159 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 USP50Q70EL3 339 aaPredicted RBP8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 RUNDC1Q96C34 613 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 KLHDC7BQ96G42 594 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 ISCA1Q9BUE6 129 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 BHLHE41Q9C0J9 482 aaPredicted RBP8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 KCNK4Q9NYG8 393 aa8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 MYBBP1AQ9BQG0 1328 aaKnown RBP8.29□□□□□ -1.08
PRPF40A-210ENST00000489741 TCERG1O14776 1098 aaKnown RBP8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 PPIP5K2O43314 1243 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 CPNE3O75131 537 aaKnown RBP8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 H2AFB1P0C5Y9 115 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms