RNA–Protein interactions for RNA: ENST00000488921.5

SPTLC1-207, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 3

Gene SPTLC1, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-207ENST00000488921 STX8Q9UNK0 236 aa16.35■□□□□ 0.21
SPTLC1-207ENST00000488921 ATP2A1O14983 1001 aa16.34■□□□□ 0.21
SPTLC1-207ENST00000488921 SLC34A2O95436 690 aa16.34■□□□□ 0.21
SPTLC1-207ENST00000488921 PCP11498 1178 aaKnown RBP16.34■□□□□ 0.21
SPTLC1-207ENST00000488921 CNGA1P29973 690 aa16.34■□□□□ 0.21
SPTLC1-207ENST00000488921 CYP2C19P33261 490 aa16.34■□□□□ 0.21
SPTLC1-207ENST00000488921 SNRNP48Q6IEG0 339 aaKnown RBP16.34■□□□□ 0.21
SPTLC1-207ENST00000488921 DIS3LQ8TF46 1054 aaKnown RBP16.34■□□□□ 0.21
SPTLC1-207ENST00000488921 KIFC2Q96AC6 838 aa16.34■□□□□ 0.21
SPTLC1-207ENST00000488921 GMCL1Q96IK5 515 aa16.34■□□□□ 0.21
SPTLC1-207ENST00000488921 TOMM22Q9NS69 142 aa16.34■□□□□ 0.21
SPTLC1-207ENST00000488921 DDX20Q9UHI6 824 aaKnown RBP16.34■□□□□ 0.21
SPTLC1-207ENST00000488921 ISY1Q9ULR0 285 aaKnown RBP16.34■□□□□ 0.21
SPTLC1-207ENST00000488921 COBLO75128 1261 aa16.33■□□□□ 0.2
SPTLC1-207ENST00000488921 IGHA2P01877 340 aa16.33■□□□□ 0.2
SPTLC1-207ENST00000488921 FGRP09769 529 aa16.33■□□□□ 0.2
SPTLC1-207ENST00000488921 CYBAP13498 195 aa16.33■□□□□ 0.2
SPTLC1-207ENST00000488921 STAT2P52630 851 aa16.33■□□□□ 0.2
SPTLC1-207ENST00000488921 OAZ1P54368 228 aa16.33■□□□□ 0.2
SPTLC1-207ENST00000488921 LHX8Q68G74 356 aa16.33■□□□□ 0.2
SPTLC1-207ENST00000488921 FAM160B2Q86V87 743 aa16.33■□□□□ 0.2
SPTLC1-207ENST00000488921 MAML3Q96JK9 1138 aa16.33■□□□□ 0.2
SPTLC1-207ENST00000488921 SLC38A10Q9HBR0 1119 aa16.33■□□□□ 0.2
SPTLC1-207ENST00000488921 DIS3Q9Y2L1 958 aaKnown RBP16.33■□□□□ 0.2
SPTLC1-207ENST00000488921 SLC1A4P43007 532 aa16.32■□□□□ 0.2
SPTLC1-207ENST00000488921 NT5C2P49902 561 aa16.32■□□□□ 0.2
SPTLC1-207ENST00000488921 IKQ13123 557 aaPredicted RBP16.32■□□□□ 0.2
SPTLC1-207ENST00000488921 HABP4Q5JVS0 413 aaKnown RBP16.32■□□□□ 0.2
SPTLC1-207ENST00000488921 CHURC1Q8WUH1 139 aa16.32■□□□□ 0.2
SPTLC1-207ENST00000488921 RNF41Q9H4P4 317 aaPredicted RBP16.32■□□□□ 0.2
SPTLC1-207ENST00000488921 FBXO40Q9UH90 709 aa16.32■□□□□ 0.2
SPTLC1-207ENST00000488921 NRBP1Q9UHY1 535 aa16.32■□□□□ 0.2
SPTLC1-207ENST00000488921 TMEM232C9JQI7 657 aa16.31■□□□□ 0.2
SPTLC1-207ENST00000488921 PLA2G6O60733 806 aa16.31■□□□□ 0.2
SPTLC1-207ENST00000488921 MNX1P50219 401 aaPredicted RBP16.31■□□□□ 0.2
SPTLC1-207ENST00000488921 RRP12Q5JTH9 1297 aaKnown RBP16.31■□□□□ 0.2
SPTLC1-207ENST00000488921 CWC27Q6UX04 472 aaKnown RBP16.31■□□□□ 0.2
SPTLC1-207ENST00000488921 MFSD6Q6ZSS7 791 aa16.31■□□□□ 0.2
SPTLC1-207ENST00000488921 CPXCR1Q8N123 301 aa16.31■□□□□ 0.2
SPTLC1-207ENST00000488921 IL17RBQ9NRM6 502 aa16.31■□□□□ 0.2
SPTLC1-207ENST00000488921 SEPT4O43236 478 aa16.3■□□□□ 0.2
SPTLC1-207ENST00000488921 NOVP48745 357 aa16.3■□□□□ 0.2
SPTLC1-207ENST00000488921 HAND2P61296 217 aa16.3■□□□□ 0.2
SPTLC1-207ENST00000488921 AKNAD1Q5T1N1 836 aa16.3■□□□□ 0.2
SPTLC1-207ENST00000488921 PPP4R3CPQ6ZMV5 832 aa16.3■□□□□ 0.2
SPTLC1-207ENST00000488921 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.3■□□□□ 0.2
SPTLC1-207ENST00000488921 MSL3Q8N5Y2 521 aaKnown RBP16.3■□□□□ 0.2
SPTLC1-207ENST00000488921 CHST13Q8NET6 341 aa16.3■□□□□ 0.2
SPTLC1-207ENST00000488921 STAG1Q8WVM7 1258 aa16.3■□□□□ 0.2
SPTLC1-207ENST00000488921 INCENPQ9NQS7 918 aa16.3■□□□□ 0.2
SPTLC1-207ENST00000488921 TCP11L1Q9NUJ3 509 aa16.3■□□□□ 0.2
SPTLC1-207ENST00000488921 CEP290O15078 2479 aa16.3■□□□□ 0.2
SPTLC1-207ENST00000488921 PFASO15067 1338 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 DNM1LO00429 736 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 ZNF213O14771 459 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 NMT2O60551 498 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 PGK2P07205 417 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 COL6A1P12109 1028 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 MCCP23508 829 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 IRX6P78412 446 aaPredicted RBP16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 ZNF792Q3KQV3 632 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 RCSD1Q6JBY9 416 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 TRPV1Q8NER1 839 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 DCAF4Q8WV16 495 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 DDX11Q96FC9 970 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 TINF2Q9BSI4 451 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 RAVER2Q9HCJ3 691 aaKnown RBP16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 COLQQ9Y215 455 aaPredicted RBP16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 TACC3Q9Y6A5 838 aa16.29■□□□□ 0.2
SPTLC1-207ENST00000488921 TOP1P11387 765 aaKnown RBP16.28■□□□□ 0.2
SPTLC1-207ENST00000488921 SLC4A3P48751 1232 aa16.28■□□□□ 0.2
SPTLC1-207ENST00000488921 CCDC96Q2M329 555 aa16.28■□□□□ 0.2
SPTLC1-207ENST00000488921 TTC22Q5TAA0 569 aa16.28■□□□□ 0.2
SPTLC1-207ENST00000488921 CHRDL2Q6WN34 429 aa16.28■□□□□ 0.2
SPTLC1-207ENST00000488921 KCTD1Q719H9 257 aa16.28■□□□□ 0.2
SPTLC1-207ENST00000488921 C7orf61Q8IZ16 206 aa16.28■□□□□ 0.2
SPTLC1-207ENST00000488921 ANKRD35Q8N283 1001 aa16.28■□□□□ 0.2
SPTLC1-207ENST00000488921 ARRDC4Q8NCT1 418 aa16.28■□□□□ 0.2
SPTLC1-207ENST00000488921 ESR2Q92731 530 aa16.28■□□□□ 0.2
SPTLC1-207ENST00000488921 DSCC1Q9BVC3 393 aa16.28■□□□□ 0.2
SPTLC1-207ENST00000488921 RIPK3Q9Y572 518 aa16.28■□□□□ 0.2
SPTLC1-207ENST00000488921 MCM3APO60318 1980 aa16.27■□□□□ 0.2
SPTLC1-207ENST00000488921 RAD50Q92878 1312 aa16.27■□□□□ 0.2
SPTLC1-207ENST00000488921 SYNGAP1Q96PV0 1343 aa16.27■□□□□ 0.2
SPTLC1-207ENST00000488921 KBTBD13C9JR72 458 aa16.27■□□□□ 0.2
SPTLC1-207ENST00000488921 TKFCQ3LXA3 575 aa16.27■□□□□ 0.2
SPTLC1-207ENST00000488921 ZNF467Q7Z7K2 595 aaPredicted RBP16.27■□□□□ 0.2
SPTLC1-207ENST00000488921 TBC1D10CQ8IV04 446 aa16.27■□□□□ 0.2
SPTLC1-207ENST00000488921 TTC14Q96N46 770 aa16.27■□□□□ 0.2
SPTLC1-207ENST00000488921 ACAD9Q9H845 621 aa16.27■□□□□ 0.2
SPTLC1-207ENST00000488921 CTNNA3Q9UI47 895 aa16.27■□□□□ 0.2
SPTLC1-207ENST00000488921 CNPY2Q9Y2B0 182 aa16.27■□□□□ 0.2
SPTLC1-207ENST00000488921 SMCHD1A6NHR9 2005 aa16.27■□□□□ 0.2
SPTLC1-207ENST00000488921 DNAJC25-GNG10A0A024R161 153 aa16.26■□□□□ 0.19
SPTLC1-207ENST00000488921 PDE4AP27815 886 aa16.26■□□□□ 0.19
SPTLC1-207ENST00000488921 IMMTQ16891 758 aaKnown RBP16.26■□□□□ 0.19
SPTLC1-207ENST00000488921 CCDC178Q5BJE1 867 aa16.26■□□□□ 0.19
SPTLC1-207ENST00000488921 TMEM47Q9BQJ4 181 aa16.26■□□□□ 0.19
SPTLC1-207ENST00000488921 MTMR7Q9Y216 660 aa16.26■□□□□ 0.19
SPTLC1-207ENST00000488921 NEDD4P46934 1319 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms