RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 PRPF38AQ8NAV1 312 aaKnown RBP21.98■■□□□ 1.11
HDAC6-231ENST00000488905 CEP95Q96GE4 821 aa21.98■■□□□ 1.11
HDAC6-231ENST00000488905 CLIP2Q9UDT6 1046 aa21.98■■□□□ 1.11
HDAC6-231ENST00000488905 PHF24Q9UPV7 400 aa21.98■■□□□ 1.11
HDAC6-231ENST00000488905 ZNF865P0CJ78 1059 aaPredicted RBP21.97■■□□□ 1.11
HDAC6-231ENST00000488905 AKR1A1P14550 325 aa21.97■■□□□ 1.11
HDAC6-231ENST00000488905 RNF180Q86T96 592 aa21.97■■□□□ 1.11
HDAC6-231ENST00000488905 IFNL3Q8IZI9 196 aa21.97■■□□□ 1.11
HDAC6-231ENST00000488905 PI4K2BQ8TCG2 481 aa21.97■■□□□ 1.11
HDAC6-231ENST00000488905 LENG1Q96BZ8 264 aaPredicted RBP21.97■■□□□ 1.11
HDAC6-231ENST00000488905 SYNPO2Q9UMS6 1093 aa21.97■■□□□ 1.11
HDAC6-231ENST00000488905 CNPY2Q9Y2B0 182 aa21.97■■□□□ 1.11
HDAC6-231ENST00000488905 RIPK3Q9Y572 518 aa21.97■■□□□ 1.11
HDAC6-231ENST00000488905 ATP2A1O14983 1001 aa21.96■■□□□ 1.11
HDAC6-231ENST00000488905 ERC2O15083 957 aa21.96■■□□□ 1.11
HDAC6-231ENST00000488905 PGK1P00558 417 aa21.96■■□□□ 1.11
HDAC6-231ENST00000488905 ZNF444Q8N0Y2 327 aaPredicted RBP21.96■■□□□ 1.11
HDAC6-231ENST00000488905 MSL3Q8N5Y2 521 aaKnown RBP21.96■■□□□ 1.11
HDAC6-231ENST00000488905 MTMR4Q9NYA4 1195 aa21.96■■□□□ 1.11
HDAC6-231ENST00000488905 PRUNE2Q8WUY3 3088 aa21.96■■□□□ 1.11
HDAC6-231ENST00000488905 SYNGAP1Q96PV0 1343 aa21.96■■□□□ 1.11
HDAC6-231ENST00000488905 PATL2C9JE40 543 aaKnown RBP21.95■■□□□ 1.1
HDAC6-231ENST00000488905 TTLL1O95922 423 aa21.95■■□□□ 1.1
HDAC6-231ENST00000488905 LRRC47Q8N1G4 583 aaKnown RBP21.95■■□□□ 1.1
HDAC6-231ENST00000488905 MKL1Q969V6 931 aa21.95■■□□□ 1.1
HDAC6-231ENST00000488905 KIFC2Q96AC6 838 aa21.95■■□□□ 1.1
HDAC6-231ENST00000488905 SEC62Q99442 399 aaKnown RBP21.95■■□□□ 1.1
HDAC6-231ENST00000488905 NACAP1Q9BZK3 213 aa21.95■■□□□ 1.1
HDAC6-231ENST00000488905 SLC38A10Q9HBR0 1119 aa21.95■■□□□ 1.1
HDAC6-231ENST00000488905 LRRC37A2A6NM11 1700 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 DNAJC25-GNG10A0A024R161 153 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 A0A1W2PQ45 241 aaPredicted RBP21.94■■□□□ 1.1
HDAC6-231ENST00000488905 A0A1W2PQY0 241 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 ZBED4O75132 1171 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 ADAMTS4O75173 837 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 FAM109BQ6ICB4 259 aaPredicted RBP21.94■■□□□ 1.1
HDAC6-231ENST00000488905 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.94■■□□□ 1.1
HDAC6-231ENST00000488905 SH3RF1Q7Z6J0 888 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 CPXCR1Q8N123 301 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 GMCL1P1Q8NEA9 526 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 OTUD7AQ8TE49 926 aaPredicted RBP21.94■■□□□ 1.1
HDAC6-231ENST00000488905 BADQ92934 168 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 DDX11Q96FC9 970 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 FSD1Q9BTV5 496 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 FEM1BQ9UK73 627 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 CTDP1Q9Y5B0 961 aaPredicted RBP21.94■■□□□ 1.1
HDAC6-231ENST00000488905 PCDHB15Q9Y5E8 787 aa21.94■■□□□ 1.1
HDAC6-231ENST00000488905 TRIM43BA6NCK2 446 aa21.93■■□□□ 1.1
HDAC6-231ENST00000488905 POTEB2H3BUK9 544 aa21.93■■□□□ 1.1
HDAC6-231ENST00000488905 TSPY3P0CV98 308 aa21.93■■□□□ 1.1
HDAC6-231ENST00000488905 TSPY8P0CW00 308 aa21.93■■□□□ 1.1
HDAC6-231ENST00000488905 TLE2Q04725 743 aa21.93■■□□□ 1.1
HDAC6-231ENST00000488905 PDE4BQ07343 736 aa21.93■■□□□ 1.1
HDAC6-231ENST00000488905 MAMDC4Q6UXC1 1216 aa21.93■■□□□ 1.1
HDAC6-231ENST00000488905 NEDD1Q8NHV4 660 aa21.93■■□□□ 1.1
HDAC6-231ENST00000488905 TRIM43Q96BQ3 446 aaPredicted RBP21.93■■□□□ 1.1
HDAC6-231ENST00000488905 NAPBQ9H115 298 aa21.93■■□□□ 1.1
HDAC6-231ENST00000488905 RAVER2Q9HCJ3 691 aaKnown RBP21.93■■□□□ 1.1
HDAC6-231ENST00000488905 SYNRGQ9UMZ2 1314 aa21.93■■□□□ 1.1
HDAC6-231ENST00000488905 VCANP13611 3396 aa21.92■■□□□ 1.1
HDAC6-231ENST00000488905 SNAI1O95863 264 aaPredicted RBP21.92■■□□□ 1.1
HDAC6-231ENST00000488905 CLTBP09497 229 aa21.92■■□□□ 1.1
HDAC6-231ENST00000488905 SLC4A3P48751 1232 aa21.92■■□□□ 1.1
HDAC6-231ENST00000488905 SHHQ15465 462 aa21.92■■□□□ 1.1
HDAC6-231ENST00000488905 ZMYM1Q5SVZ6 1142 aa21.92■■□□□ 1.1
HDAC6-231ENST00000488905 C9orf50Q5SZB4 431 aa21.92■■□□□ 1.1
HDAC6-231ENST00000488905 ZNF467Q7Z7K2 595 aaPredicted RBP21.92■■□□□ 1.1
HDAC6-231ENST00000488905 ZHX1Q9UKY1 873 aaPredicted RBP21.92■■□□□ 1.1
HDAC6-231ENST00000488905 LCTP09848 1927 aa21.91■■□□□ 1.1
HDAC6-231ENST00000488905 SLC3A2P08195 630 aaKnown RBP21.91■■□□□ 1.1
HDAC6-231ENST00000488905 BMP3P12645 472 aa21.91■■□□□ 1.1
HDAC6-231ENST00000488905 MX1P20591 662 aa21.91■■□□□ 1.1
HDAC6-231ENST00000488905 OAZ1P54368 228 aa21.91■■□□□ 1.1
HDAC6-231ENST00000488905 PPARAQ07869 468 aa21.91■■□□□ 1.1
HDAC6-231ENST00000488905 SLFN13Q68D06 897 aa21.91■■□□□ 1.1
HDAC6-231ENST00000488905 GUCD1Q96NT3 240 aa21.91■■□□□ 1.1
HDAC6-231ENST00000488905 FBXO40Q9UH90 709 aa21.91■■□□□ 1.1
HDAC6-231ENST00000488905 FAM184BQ9ULE4 1060 aa21.91■■□□□ 1.1
HDAC6-231ENST00000488905 DLL1O00548 723 aa21.9■■□□□ 1.1
HDAC6-231ENST00000488905 PQBP1O60828 265 aaKnown RBP21.9■■□□□ 1.1
HDAC6-231ENST00000488905 ANKRD35Q8N283 1001 aa21.9■■□□□ 1.1
HDAC6-231ENST00000488905 CHST13Q8NET6 341 aa21.9■■□□□ 1.1
HDAC6-231ENST00000488905 FGD4Q96M96 766 aa21.9■■□□□ 1.1
HDAC6-231ENST00000488905 TSEN34Q9BSV6 310 aaKnown RBP21.9■■□□□ 1.1
HDAC6-231ENST00000488905 TACC3Q9Y6A5 838 aa21.9■■□□□ 1.1
HDAC6-231ENST00000488905 SALL3Q9BXA9 1300 aa21.89■■□□□ 1.1
HDAC6-231ENST00000488905 ACLYP53396 1101 aa21.89■■□□□ 1.09
HDAC6-231ENST00000488905 TFAP4Q01664 338 aa21.89■■□□□ 1.09
HDAC6-231ENST00000488905 ZNF697Q5TEC3 545 aa21.89■■□□□ 1.09
HDAC6-231ENST00000488905 STARD7Q9NQZ5 370 aa21.89■■□□□ 1.09
HDAC6-231ENST00000488905 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.89■■□□□ 1.09
HDAC6-231ENST00000488905 ISY1Q9ULR0 285 aaKnown RBP21.89■■□□□ 1.09
HDAC6-231ENST00000488905 MOXD2PA6NHM9 499 aa21.88■■□□□ 1.09
HDAC6-231ENST00000488905 FOXP2O15409 715 aa21.88■■□□□ 1.09
HDAC6-231ENST00000488905 FDX1P10109 184 aa21.88■■□□□ 1.09
HDAC6-231ENST00000488905 ITGB8P26012 769 aa21.88■■□□□ 1.09
HDAC6-231ENST00000488905 STAT2P52630 851 aa21.88■■□□□ 1.09
HDAC6-231ENST00000488905 ACVR2BQ13705 512 aa21.88■■□□□ 1.09
HDAC6-231ENST00000488905 KLHDC9Q8NEP7 349 aa21.88■■□□□ 1.09
HDAC6-231ENST00000488905 NUP133Q8WUM0 1156 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms