RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 NLRP5P59047 1200 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 HERVK_113P62684 666 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 PAPD7Q5XG87 772 aaKnown RBP13.72□□□□□ -0.21
COL3A1-206ENST00000487010 ZNF662Q6ZS27 426 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 ADSSL1Q8N142 457 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 CTCFLQ8NI51 663 aaPredicted RBP13.72□□□□□ -0.21
COL3A1-206ENST00000487010 ZNF507Q8TCN5 953 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 RIOK1Q9BRS2 568 aaKnown RBP13.72□□□□□ -0.21
COL3A1-206ENST00000487010 MKRN1Q9UHC7 482 aaKnown RBP13.72□□□□□ -0.21
COL3A1-206ENST00000487010 CAPN11Q9UMQ6 739 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 IQSEC3Q9UPP2 1182 aaPredicted RBP13.72□□□□□ -0.21
COL3A1-206ENST00000487010 SAR1BQ9Y6B6 198 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 SYF2O95926 243 aaKnown RBP13.71□□□□□ -0.21
COL3A1-206ENST00000487010 ATP1A1P05023 1023 aaKnown RBP13.71□□□□□ -0.21
COL3A1-206ENST00000487010 PCP11498 1178 aaKnown RBP13.71□□□□□ -0.21
COL3A1-206ENST00000487010 LONP1P36776 959 aaKnown RBP13.71□□□□□ -0.21
COL3A1-206ENST00000487010 IGHMBP2P38935 993 aaKnown RBP13.71□□□□□ -0.21
COL3A1-206ENST00000487010 TSR1Q2NL82 804 aaKnown RBP13.71□□□□□ -0.21
COL3A1-206ENST00000487010 MAP9Q49MG5 647 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 ARL6IP4Q66PJ3 421 aaKnown RBP13.71□□□□□ -0.21
COL3A1-206ENST00000487010 FOXR1Q6PIV2 292 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 WDR59Q6PJI9 974 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 LRRC31Q6UY01 552 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 MMS19Q96T76 1030 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 BRIP1Q9BX63 1249 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 FAM204AQ9H8W3 233 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 ABCF2Q9UG63 623 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 XIRP1Q702N8 1843 aaKnown RBP13.71□□□□□ -0.21
COL3A1-206ENST00000487010 TARSL2A2RTX5 802 aaKnown RBP13.71□□□□□ -0.21
COL3A1-206ENST00000487010 TRIM49BA6NDI0 452 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 SCG2P13521 617 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 CHRNDQ07001 517 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 CCDC122Q5T0U0 273 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 C4orf32Q8N8J7 132 aa13.71□□□□□ -0.21
COL3A1-206ENST00000487010 CICQ96RK0 1608 aaPredicted RBP13.71□□□□□ -0.22
COL3A1-206ENST00000487010 BCL9O00512 1426 aa13.71□□□□□ -0.22
COL3A1-206ENST00000487010 PDS5AQ29RF7 1337 aaKnown RBP13.71□□□□□ -0.22
COL3A1-206ENST00000487010 ADAMTS3O15072 1205 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 RNF40O75150 1001 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 EEF1GP26641 437 aaKnown RBP13.7□□□□□ -0.22
COL3A1-206ENST00000487010 STAT6P42226 847 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 PMS1P54277 932 aaKnown RBP13.7□□□□□ -0.22
COL3A1-206ENST00000487010 DYNLL1P63167 89 aaKnown RBP13.7□□□□□ -0.22
COL3A1-206ENST00000487010 KRT83P78385 493 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 PFKFB3Q16875 520 aaPredicted RBP13.7□□□□□ -0.22
COL3A1-206ENST00000487010 CCDC152Q4G0S7 254 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 RPGRIP1Q96KN7 1286 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 THAP9Q9H5L6 903 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 HPCAL4Q9UM19 191 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 CACNA1SQ13698 1873 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 SRGAP2O75044 1071 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 PRPF6O94906 941 aaKnown RBP13.7□□□□□ -0.22
COL3A1-206ENST00000487010 CKAP4Q07065 602 aaKnown RBP13.7□□□□□ -0.22
COL3A1-206ENST00000487010 CTR9Q6PD62 1173 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 GOLGA6L1Q8N7Z2 621 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 EHBP1Q8NDI1 1231 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 RNF216Q9NWF9 866 aaPredicted RBP13.7□□□□□ -0.22
COL3A1-206ENST00000487010 RSPH14Q9UHP6 348 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 TFR2Q9UP52 801 aa13.7□□□□□ -0.22
COL3A1-206ENST00000487010 VEGFAP15692 232 aaPredicted RBP13.69□□□□□ -0.22
COL3A1-206ENST00000487010 TNNT3P45378 269 aaPredicted RBP13.69□□□□□ -0.22
COL3A1-206ENST00000487010 KCNB1Q14721 858 aa13.69□□□□□ -0.22
COL3A1-206ENST00000487010 MEA1Q16626 185 aa13.69□□□□□ -0.22
COL3A1-206ENST00000487010 KIAA1328Q86T90 577 aa13.69□□□□□ -0.22
COL3A1-206ENST00000487010 AFAP1L1Q8TED9 768 aa13.69□□□□□ -0.22
COL3A1-206ENST00000487010 JAKMIP2Q96AA8 810 aa13.69□□□□□ -0.22
COL3A1-206ENST00000487010 DISC1Q9NRI5 854 aa13.69□□□□□ -0.22
COL3A1-206ENST00000487010 ZNF804BA4D1E1 1349 aa13.69□□□□□ -0.22
COL3A1-206ENST00000487010 ZC3H4Q9UPT8 1303 aaKnown RBP13.69□□□□□ -0.22
COL3A1-206ENST00000487010 PES1O00541 588 aaKnown RBP13.68□□□□□ -0.22
COL3A1-206ENST00000487010 KRT86O43790 486 aa13.68□□□□□ -0.22
COL3A1-206ENST00000487010 SRGNP10124 158 aa13.68□□□□□ -0.22
COL3A1-206ENST00000487010 DNM2P50570 870 aa13.68□□□□□ -0.22
COL3A1-206ENST00000487010 COG1Q8WTW3 980 aa13.68□□□□□ -0.22
COL3A1-206ENST00000487010 ZFP91Q96JP5 570 aaPredicted RBP13.68□□□□□ -0.22
COL3A1-206ENST00000487010 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.68□□□□□ -0.22
COL3A1-206ENST00000487010 KLRC4O43908 158 aa13.68□□□□□ -0.22
COL3A1-206ENST00000487010 CYLC1P35663 651 aaPredicted RBP13.68□□□□□ -0.22
COL3A1-206ENST00000487010 STIM1Q13586 685 aa13.68□□□□□ -0.22
COL3A1-206ENST00000487010 NAALADL2Q58DX5 795 aa13.68□□□□□ -0.22
COL3A1-206ENST00000487010 NOC3LQ8WTT2 800 aaKnown RBP13.68□□□□□ -0.22
COL3A1-206ENST00000487010 CAPZA3Q96KX2 299 aa13.68□□□□□ -0.22
COL3A1-206ENST00000487010 TTYH3Q9C0H2 523 aa13.68□□□□□ -0.22
COL3A1-206ENST00000487010 GNL3LQ9NVN8 582 aaKnown RBP13.68□□□□□ -0.22
COL3A1-206ENST00000487010 MAGEC2Q9UBF1 373 aaPredicted RBP13.68□□□□□ -0.22
COL3A1-206ENST00000487010 BAZ2BQ9UIF8 2168 aaKnown RBP13.68□□□□□ -0.22
COL3A1-206ENST00000487010 A0A1B0GUL6 1792 aa13.67□□□□□ -0.22
COL3A1-206ENST00000487010 EIF3CLB5ME19 914 aaKnown RBP13.67□□□□□ -0.22
COL3A1-206ENST00000487010 USP17L12C9JPN9 530 aa13.67□□□□□ -0.22
COL3A1-206ENST00000487010 USP17L21D6R901 530 aa13.67□□□□□ -0.22
COL3A1-206ENST00000487010 PSMA7O14818 248 aa13.67□□□□□ -0.22
COL3A1-206ENST00000487010 ORC4O43929 436 aa13.67□□□□□ -0.22
COL3A1-206ENST00000487010 NMT2O60551 498 aa13.67□□□□□ -0.22
COL3A1-206ENST00000487010 CALML3P27482 149 aa13.67□□□□□ -0.22
COL3A1-206ENST00000487010 GYG1P46976 350 aa13.67□□□□□ -0.22
COL3A1-206ENST00000487010 SEMA3FQ13275 785 aa13.67□□□□□ -0.22
COL3A1-206ENST00000487010 CCDC170Q8IYT3 715 aa13.67□□□□□ -0.22
COL3A1-206ENST00000487010 BLIDQ8IZY5 108 aa13.67□□□□□ -0.22
COL3A1-206ENST00000487010 TRIM47Q96LD4 638 aa13.67□□□□□ -0.22
COL3A1-206ENST00000487010 EIF3CQ99613 913 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms