RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 ZNFX1Q9P2E3 1918 aaKnown RBP19.61■□□□□ 0.73
TRIM54-203ENST00000485306 ZNF236Q9UL36 1845 aa19.61■□□□□ 0.73
TRIM54-203ENST00000485306 EVI5O60447 810 aa19.61■□□□□ 0.73
TRIM54-203ENST00000485306 MSCO60682 206 aa19.61■□□□□ 0.73
TRIM54-203ENST00000485306 EIF5BO60841 1220 aaKnown RBP19.61■□□□□ 0.73
TRIM54-203ENST00000485306 SLFN13Q68D06 897 aa19.61■□□□□ 0.73
TRIM54-203ENST00000485306 LRRC47Q8N1G4 583 aaKnown RBP19.61■□□□□ 0.73
TRIM54-203ENST00000485306 MMP19Q99542 508 aa19.61■□□□□ 0.73
TRIM54-203ENST00000485306 TOMM22Q9NS69 142 aa19.61■□□□□ 0.73
TRIM54-203ENST00000485306 ORC4O43929 436 aa19.6■□□□□ 0.73
TRIM54-203ENST00000485306 BMP3P12645 472 aa19.6■□□□□ 0.73
TRIM54-203ENST00000485306 CYP2C19P33261 490 aa19.6■□□□□ 0.73
TRIM54-203ENST00000485306 RUFY2Q8WXA3 655 aa19.6■□□□□ 0.73
TRIM54-203ENST00000485306 KIFC2Q96AC6 838 aa19.6■□□□□ 0.73
TRIM54-203ENST00000485306 TEX13BQ9BXU2 312 aa19.6■□□□□ 0.73
TRIM54-203ENST00000485306 C11orf49Q9H6J7 331 aa19.6■□□□□ 0.73
TRIM54-203ENST00000485306 INCENPQ9NQS7 918 aa19.6■□□□□ 0.73
TRIM54-203ENST00000485306 ZNF214Q9UL59 606 aaPredicted RBP19.6■□□□□ 0.73
TRIM54-203ENST00000485306 ISY1Q9ULR0 285 aaKnown RBP19.6■□□□□ 0.73
TRIM54-203ENST00000485306 STX8Q9UNK0 236 aa19.6■□□□□ 0.73
TRIM54-203ENST00000485306 CEP290O15078 2479 aa19.59■□□□□ 0.73
TRIM54-203ENST00000485306 COBLO75128 1261 aa19.59■□□□□ 0.73
TRIM54-203ENST00000485306 FDX1P10109 184 aa19.59■□□□□ 0.73
TRIM54-203ENST00000485306 CHMLP26374 656 aa19.59■□□□□ 0.73
TRIM54-203ENST00000485306 LHX8Q68G74 356 aa19.59■□□□□ 0.73
TRIM54-203ENST00000485306 REPS2Q8NFH8 660 aa19.59■□□□□ 0.73
TRIM54-203ENST00000485306 DIS3LQ8TF46 1054 aaKnown RBP19.59■□□□□ 0.73
TRIM54-203ENST00000485306 CHURC1Q8WUH1 139 aa19.59■□□□□ 0.73
TRIM54-203ENST00000485306 TACC3Q9Y6A5 838 aa19.59■□□□□ 0.73
TRIM54-203ENST00000485306 RAD50Q92878 1312 aa19.58■□□□□ 0.73
TRIM54-203ENST00000485306 ATP2A1O14983 1001 aa19.58■□□□□ 0.72
TRIM54-203ENST00000485306 FGRP09769 529 aa19.58■□□□□ 0.72
TRIM54-203ENST00000485306 SLC1A4P43007 532 aa19.58■□□□□ 0.72
TRIM54-203ENST00000485306 SNRNP48Q6IEG0 339 aaKnown RBP19.58■□□□□ 0.72
TRIM54-203ENST00000485306 CPXCR1Q8N123 301 aa19.58■□□□□ 0.72
TRIM54-203ENST00000485306 GMCL1Q96IK5 515 aa19.58■□□□□ 0.72
TRIM54-203ENST00000485306 DDX20Q9UHI6 824 aaKnown RBP19.58■□□□□ 0.72
TRIM54-203ENST00000485306 DIS3Q9Y2L1 958 aaKnown RBP19.58■□□□□ 0.72
TRIM54-203ENST00000485306 TMEM232C9JQI7 657 aa19.57■□□□□ 0.72
TRIM54-203ENST00000485306 IGHA2P01877 340 aa19.57■□□□□ 0.72
TRIM54-203ENST00000485306 PCP11498 1178 aaKnown RBP19.57■□□□□ 0.72
TRIM54-203ENST00000485306 SLC4A3P48751 1232 aa19.57■□□□□ 0.72
TRIM54-203ENST00000485306 STAT2P52630 851 aa19.57■□□□□ 0.72
TRIM54-203ENST00000485306 IKQ13123 557 aaPredicted RBP19.57■□□□□ 0.72
TRIM54-203ENST00000485306 RRP12Q5JTH9 1297 aaKnown RBP19.57■□□□□ 0.72
TRIM54-203ENST00000485306 HABP4Q5JVS0 413 aaKnown RBP19.57■□□□□ 0.72
TRIM54-203ENST00000485306 MFSD6Q6ZSS7 791 aa19.57■□□□□ 0.72
TRIM54-203ENST00000485306 FAM160B2Q86V87 743 aa19.57■□□□□ 0.72
TRIM54-203ENST00000485306 MAML3Q96JK9 1138 aa19.57■□□□□ 0.72
TRIM54-203ENST00000485306 SLC38A10Q9HBR0 1119 aa19.57■□□□□ 0.72
TRIM54-203ENST00000485306 IL17RBQ9NRM6 502 aa19.57■□□□□ 0.72
TRIM54-203ENST00000485306 MCCP23508 829 aa19.56■□□□□ 0.72
TRIM54-203ENST00000485306 OAZ1P54368 228 aa19.56■□□□□ 0.72
TRIM54-203ENST00000485306 HAND2P61296 217 aa19.56■□□□□ 0.72
TRIM54-203ENST00000485306 STAG1Q8WVM7 1258 aa19.56■□□□□ 0.72
TRIM54-203ENST00000485306 DDX11Q96FC9 970 aa19.56■□□□□ 0.72
TRIM54-203ENST00000485306 RNF41Q9H4P4 317 aaPredicted RBP19.56■□□□□ 0.72
TRIM54-203ENST00000485306 FBXO40Q9UH90 709 aa19.56■□□□□ 0.72
TRIM54-203ENST00000485306 ZNF213O14771 459 aa19.55■□□□□ 0.72
TRIM54-203ENST00000485306 NMT2O60551 498 aa19.55■□□□□ 0.72
TRIM54-203ENST00000485306 PGK2P07205 417 aa19.55■□□□□ 0.72
TRIM54-203ENST00000485306 CYBAP13498 195 aa19.55■□□□□ 0.72
TRIM54-203ENST00000485306 HOXD11P31277 338 aaPredicted RBP19.55■□□□□ 0.72
TRIM54-203ENST00000485306 MNX1P50219 401 aaPredicted RBP19.55■□□□□ 0.72
TRIM54-203ENST00000485306 AKNAD1Q5T1N1 836 aa19.55■□□□□ 0.72
TRIM54-203ENST00000485306 RCSD1Q6JBY9 416 aa19.55■□□□□ 0.72
TRIM54-203ENST00000485306 DSCC1Q9BVC3 393 aa19.55■□□□□ 0.72
TRIM54-203ENST00000485306 IL25Q9H293 177 aa19.55■□□□□ 0.72
TRIM54-203ENST00000485306 RAVER2Q9HCJ3 691 aaKnown RBP19.55■□□□□ 0.72
TRIM54-203ENST00000485306 TCP11L1Q9NUJ3 509 aa19.55■□□□□ 0.72
TRIM54-203ENST00000485306 COLQQ9Y215 455 aaPredicted RBP19.55■□□□□ 0.72
TRIM54-203ENST00000485306 SEPT4O43236 478 aa19.54■□□□□ 0.72
TRIM54-203ENST00000485306 PLA2G6O60733 806 aa19.54■□□□□ 0.72
TRIM54-203ENST00000485306 SLC34A2O95436 690 aa19.54■□□□□ 0.72
TRIM54-203ENST00000485306 ZNF792Q3KQV3 632 aa19.54■□□□□ 0.72
TRIM54-203ENST00000485306 TBC1D10CQ8IV04 446 aa19.54■□□□□ 0.72
TRIM54-203ENST00000485306 ARRDC4Q8NCT1 418 aa19.54■□□□□ 0.72
TRIM54-203ENST00000485306 TRPV1Q8NER1 839 aa19.54■□□□□ 0.72
TRIM54-203ENST00000485306 CHST13Q8NET6 341 aa19.54■□□□□ 0.72
TRIM54-203ENST00000485306 NRBP1Q9UHY1 535 aa19.54■□□□□ 0.72
TRIM54-203ENST00000485306 TOP1P11387 765 aaKnown RBP19.53■□□□□ 0.72
TRIM54-203ENST00000485306 NOVP48745 357 aa19.53■□□□□ 0.72
TRIM54-203ENST00000485306 NT5C2P49902 561 aa19.53■□□□□ 0.72
TRIM54-203ENST00000485306 CHMP4CQ96CF2 233 aa19.53■□□□□ 0.72
TRIM54-203ENST00000485306 TINF2Q9BSI4 451 aa19.53■□□□□ 0.72
TRIM54-203ENST00000485306 RIPK3Q9Y572 518 aa19.53■□□□□ 0.72
TRIM54-203ENST00000485306 PLXNA1Q9UIW2 1896 aa19.53■□□□□ 0.72
TRIM54-203ENST00000485306 SGSM2O43147 1006 aa19.52■□□□□ 0.72
TRIM54-203ENST00000485306 COL6A1P12109 1028 aa19.52■□□□□ 0.72
TRIM54-203ENST00000485306 PRAMEF19Q5SWL8 479 aa19.52■□□□□ 0.72
TRIM54-203ENST00000485306 CHRDL2Q6WN34 429 aa19.52■□□□□ 0.72
TRIM54-203ENST00000485306 KCTD1Q719H9 257 aa19.52■□□□□ 0.72
TRIM54-203ENST00000485306 ANKRD35Q8N283 1001 aa19.52■□□□□ 0.72
TRIM54-203ENST00000485306 MSL3Q8N5Y2 521 aaKnown RBP19.52■□□□□ 0.72
TRIM54-203ENST00000485306 DCAF4Q8WV16 495 aa19.52■□□□□ 0.72
TRIM54-203ENST00000485306 ESR2Q92731 530 aa19.52■□□□□ 0.72
TRIM54-203ENST00000485306 TTC14Q96N46 770 aa19.52■□□□□ 0.72
TRIM54-203ENST00000485306 ESYT1Q9BSJ8 1104 aa19.52■□□□□ 0.72
TRIM54-203ENST00000485306 CTNNA3Q9UI47 895 aa19.52■□□□□ 0.72
TRIM54-203ENST00000485306 MTMR7Q9Y216 660 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms