RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 SHMT1P34896 483 aa9.34□□□□□ -0.91
USP54-213ENST00000481991 BEX3Q00994 111 aa9.34□□□□□ -0.91
USP54-213ENST00000481991 C1QBPQ07021 282 aaKnown RBP9.34□□□□□ -0.91
USP54-213ENST00000481991 ACVR2BQ13705 512 aa9.34□□□□□ -0.91
USP54-213ENST00000481991 SCLYQ96I15 445 aa9.34□□□□□ -0.91
USP54-213ENST00000481991 DBNDD2Q9BQY9 259 aa9.34□□□□□ -0.91
USP54-213ENST00000481991 BCL11AQ9H165 835 aa9.34□□□□□ -0.91
USP54-213ENST00000481991 DIS3Q9Y2L1 958 aaKnown RBP9.34□□□□□ -0.91
USP54-213ENST00000481991 UMODL1Q5DID0 1318 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 KIF28PB7ZC32 967 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 SNAI1O95863 264 aaPredicted RBP9.33□□□□□ -0.92
USP54-213ENST00000481991 GNAI3P08754 354 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 CCDC144BQ3MJ40 725 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 CCSAPQ6IQ19 270 aaPredicted RBP9.33□□□□□ -0.92
USP54-213ENST00000481991 CXCL17Q6UXB2 119 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 RIOX2Q8IUF8 465 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 CLEC10AQ8IUN9 316 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 FAM126BQ8IXS8 530 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 CPXCR1Q8N123 301 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 FTOQ9C0B1 505 aaKnown RBP eCLIP9.33□□□□□ -0.92
USP54-213ENST00000481991 TRPV6Q9H1D0 765 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 EHD4Q9H223 541 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 C11orf16Q9NQ32 467 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 FBXO28Q9NVF7 368 aa9.33□□□□□ -0.92
USP54-213ENST00000481991 MAGEB6P1A0A0J9YX57 407 aa9.32□□□□□ -0.92
USP54-213ENST00000481991 ITGA7Q13683 1181 aa9.32□□□□□ -0.92
USP54-213ENST00000481991 EP400NLQ6ZTU2 488 aa9.32□□□□□ -0.92
USP54-213ENST00000481991 TMEM179Q6ZVK1 233 aa9.32□□□□□ -0.92
USP54-213ENST00000481991 ANKRD35Q8N283 1001 aa9.32□□□□□ -0.92
USP54-213ENST00000481991 API5Q9BZZ5 524 aaKnown RBP9.32□□□□□ -0.92
USP54-213ENST00000481991 AP5M1Q9H0R1 490 aa9.32□□□□□ -0.92
USP54-213ENST00000481991 CCDC8Q9H0W5 538 aaPredicted RBP9.32□□□□□ -0.92
USP54-213ENST00000481991 SH2D4AQ9H788 454 aa9.32□□□□□ -0.92
USP54-213ENST00000481991 CD320Q9NPF0 282 aa9.32□□□□□ -0.92
USP54-213ENST00000481991 NCOR1O75376 2440 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 EPOPA6NHQ4 379 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 PRR33A8MZF0 331 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 VWA5AO00534 786 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 DYNC1LI2O43237 492 aaPredicted RBP9.31□□□□□ -0.92
USP54-213ENST00000481991 ZEB2O60315 1214 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 CD4P01730 458 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 CYP2D6P10635 497 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 ACTN1P12814 892 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 GJA9P57773 515 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 EVX2Q03828 476 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 ICA1Q05084 483 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 TTLL4Q14679 1199 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 ALDH1L2Q3SY69 923 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 TNNI3KQ59H18 835 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 SNRNP48Q6IEG0 339 aaKnown RBP9.31□□□□□ -0.92
USP54-213ENST00000481991 CERS3Q8IU89 383 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 GJD3Q8N144 294 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 DYNLL2Q96FJ2 89 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 ZBED2Q9BTP6 218 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 CRNKL1Q9BZJ0 848 aaKnown RBP9.31□□□□□ -0.92
USP54-213ENST00000481991 VCPKMTQ9H867 229 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.31□□□□□ -0.92
USP54-213ENST00000481991 ISY1Q9ULR0 285 aaKnown RBP9.31□□□□□ -0.92
USP54-213ENST00000481991 FPGT-TNNI3KV9GXZ4 949 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 CDK5RAP2Q96SN8 1893 aa9.31□□□□□ -0.92
USP54-213ENST00000481991 PNMA6EA0A0J9YXQ4 647 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 WDR46O15213 610 aaKnown RBP9.3□□□□□ -0.92
USP54-213ENST00000481991 ANP32CO43423 234 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 B4GALT4O60513 344 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 SURF6O75683 361 aaKnown RBP9.3□□□□□ -0.92
USP54-213ENST00000481991 GNAI2P04899 355 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 ALADP13716 330 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 AKR1B1P15121 316 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 COPB2P35606 906 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 CHMP4BP1P59074 171 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 PSMC6P62333 389 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 NHLH1Q02575 133 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 TNFAIP2Q03169 654 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 GRB10Q13322 594 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 FAM83BQ5T0W9 1011 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 MSL3Q8N5Y2 521 aaKnown RBP9.3□□□□□ -0.92
USP54-213ENST00000481991 FBXL18Q96ME1 805 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 CRBNQ96SW2 442 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 ABHD16BQ9H3Z7 469 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 GOPCQ9HD26 462 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 MTUS1Q9ULD2 1270 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 TMX2Q9Y320 296 aa9.3□□□□□ -0.92
USP54-213ENST00000481991 ZNFX1Q9P2E3 1918 aaKnown RBP9.3□□□□□ -0.92
USP54-213ENST00000481991 SIPA1L1O43166 1804 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 E9PSI1 815 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 ZBED4O75132 1171 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 BCAR3O75815 825 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 CYP2C9P11712 490 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 EEF2P13639 858 aaKnown RBP9.29□□□□□ -0.92
USP54-213ENST00000481991 KCNA5P22460 613 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 CST5P28325 142 aaPredicted RBP9.29□□□□□ -0.92
USP54-213ENST00000481991 FAM47CQ5HY64 1035 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 SIAH1Q8IUQ4 282 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 STK11IPQ8N1F8 1099 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 RETREG2Q8NC44 543 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 SDR42E1Q8WUS8 393 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 KIFC2Q96AC6 838 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 NOC4LQ9BVI4 516 aaKnown RBP9.29□□□□□ -0.92
USP54-213ENST00000481991 ANTXR1Q9H6X2 564 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 RAVER2Q9HCJ3 691 aaKnown RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms