RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 NT5C2P49902 561 aa14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 ALX1Q15699 326 aa14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 LRRC26Q2I0M4 334 aa14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 SNRNP48Q6IEG0 339 aaKnown RBP14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 GPR153Q6NV75 609 aa14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 ZNF467Q7Z7K2 595 aaPredicted RBP14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 FAM160B2Q86V87 743 aa14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 SMC5Q8IY18 1101 aa14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 STK11IPQ8N1F8 1099 aa14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 CHST13Q8NET6 341 aa14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 GMCL1Q96IK5 515 aa14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 TINF2Q9BSI4 451 aa14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 RWDD1Q9H446 243 aaPredicted RBP14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 SYNGAP1Q96PV0 1343 aa14.4□□□□□ -0.1
SQSTM1-207ENST00000481335 LTBP2Q14767 1821 aa14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 LAMA4Q16363 1823 aa14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 TSPY2A6NKD2 308 aa14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 FOXP2O15409 715 aa14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 ORC4O43929 436 aa14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 PCP11498 1178 aaKnown RBP14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 BMP3P12645 472 aa14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 STAT2P52630 851 aa14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 TFAP4Q01664 338 aa14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 C1orf53Q5VUE5 145 aa14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 CHURC1Q8WUH1 139 aa14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 NUP88Q99567 741 aaPredicted RBP14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 SENP6Q9GZR1 1112 aaPredicted RBP14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 ZMYND8Q9ULU4 1186 aaPredicted RBP14.39□□□□□ -0.11
SQSTM1-207ENST00000481335 MCM3APO60318 1980 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 DNAJC25-GNG10A0A024R161 153 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 FGRP09769 529 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 RARBP10826 455 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 AKR1A1P14550 325 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 MAGEA10P43363 369 aaPredicted RBP14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 NOVP48745 357 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 MFAP1P55081 439 aaKnown RBP14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 SNX17Q15036 470 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 LRIT3Q3SXY7 679 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 MCMDC2Q4G0Z9 681 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 SLFN13Q68D06 897 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 MAMDC4Q6UXC1 1216 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 TDHQ8IZJ6 230 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 LRRC47Q8N1G4 583 aaKnown RBP14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 KIFC2Q96AC6 838 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 OSBPL3Q9H4L5 887 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 CNPY2Q9Y2B0 182 aa14.38□□□□□ -0.11
SQSTM1-207ENST00000481335 PGK2P07205 417 aa14.37□□□□□ -0.11
SQSTM1-207ENST00000481335 SLC1A4P43007 532 aa14.37□□□□□ -0.11
SQSTM1-207ENST00000481335 TKFCQ3LXA3 575 aa14.37□□□□□ -0.11
SQSTM1-207ENST00000481335 RNF180Q86T96 592 aa14.37□□□□□ -0.11
SQSTM1-207ENST00000481335 DDX11Q96FC9 970 aa14.37□□□□□ -0.11
SQSTM1-207ENST00000481335 PRKAG2Q9UGJ0 569 aa14.37□□□□□ -0.11
SQSTM1-207ENST00000481335 SYN1P17600 705 aa14.36□□□□□ -0.11
SQSTM1-207ENST00000481335 LRRC41Q15345 812 aa14.36□□□□□ -0.11
SQSTM1-207ENST00000481335 FAM47AQ5JRC9 791 aa14.36□□□□□ -0.11
SQSTM1-207ENST00000481335 GJC2Q5T442 439 aaPredicted RBP14.36□□□□□ -0.11
SQSTM1-207ENST00000481335 RCSD1Q6JBY9 416 aa14.36□□□□□ -0.11
SQSTM1-207ENST00000481335 CCDC129Q6ZRS4 1044 aa14.36□□□□□ -0.11
SQSTM1-207ENST00000481335 STAG1Q8WVM7 1258 aa14.36□□□□□ -0.11
SQSTM1-207ENST00000481335 XPNPEP3Q9NQH7 507 aa14.36□□□□□ -0.11
SQSTM1-207ENST00000481335 TCP11L1Q9NUJ3 509 aa14.36□□□□□ -0.11
SQSTM1-207ENST00000481335 STX8Q9UNK0 236 aa14.36□□□□□ -0.11
SQSTM1-207ENST00000481335 RIPK3Q9Y572 518 aa14.36□□□□□ -0.11
SQSTM1-207ENST00000481335 A0A0D9SFI3 127 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 TMEM232C9JQI7 657 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 ZNF865P0CJ78 1059 aaPredicted RBP14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 RTP1P59025 263 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 PRAMEF19Q5SWL8 479 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 VPS53Q5VIR6 699 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 SLC39A5Q6ZMH5 540 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 CHD1LQ86WJ1 897 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 CPXCR1Q8N123 301 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 ANKRD35Q8N283 1001 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 TSEN34Q9BSV6 310 aaKnown RBP14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 UBE2OQ9C0C9 1292 aaKnown RBP14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 LNPKQ9C0E8 428 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 ACAD9Q9H845 621 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 RAVER2Q9HCJ3 691 aaKnown RBP14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 PHF24Q9UPV7 400 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 CCDC171Q6TFL3 1326 aa14.35□□□□□ -0.11
SQSTM1-207ENST00000481335 TRIM6-TRIM34B2RNG4 842 aa14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 HIP1O00291 1037 aa14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 RANBP6O60518 1105 aaKnown RBP14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 FGAP02671 866 aa14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 HSPD1P10809 573 aaKnown RBP14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 NUCB1Q02818 461 aa14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 CTDSPL2Q05D32 466 aa14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 DCAF4Q8WV16 495 aa14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 FAM227BQ96M60 508 aa14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 LBHD1Q9BQE6 289 aaPredicted RBP14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 ABHD16BQ9H3Z7 469 aa14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 IL17RBQ9NRM6 502 aa14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 PNMA2Q9UL42 364 aa14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 FAM184BQ9ULE4 1060 aa14.34□□□□□ -0.11
SQSTM1-207ENST00000481335 LRRC37A2A6NM11 1700 aa14.33□□□□□ -0.12
SQSTM1-207ENST00000481335 MOXD2PA6NHM9 499 aa14.33□□□□□ -0.12
SQSTM1-207ENST00000481335 ATN1P54259 1190 aaPredicted RBP14.33□□□□□ -0.12
SQSTM1-207ENST00000481335 IKQ13123 557 aaPredicted RBP14.33□□□□□ -0.12
SQSTM1-207ENST00000481335 ANO1Q5XXA6 986 aa14.33□□□□□ -0.12
SQSTM1-207ENST00000481335 TTC14Q96N46 770 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms