RNA–Protein interactions for RNA: ENST00000481260.1

RAPGEF1-207, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 5

Gene RAPGEF1, Length 1,034 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-207ENST00000481260 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.48□□□□□ -0.25
RAPGEF1-207ENST00000481260 CPVLQ9H3G5 476 aa13.48□□□□□ -0.25
RAPGEF1-207ENST00000481260 CWC22Q9HCG8 908 aaKnown RBP13.48□□□□□ -0.25
RAPGEF1-207ENST00000481260 PAK6Q9NQU5 681 aaPredicted RBP13.48□□□□□ -0.25
RAPGEF1-207ENST00000481260 GJB1P08034 283 aa13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 XRCC5P13010 732 aaKnown RBP13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 ZKSCAN1P17029 563 aaPredicted RBP13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 STAT3P40763 770 aa13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 GJA8P48165 433 aa13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 MNX1P50219 401 aaPredicted RBP13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 MFAP1P55081 439 aaKnown RBP13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 UBXN2AP68543 259 aa13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 PRAMEF19Q5SWL8 479 aa13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 UBE2Q1Q7Z7E8 422 aa13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 RIOX2Q8IUF8 465 aa13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 MB21D1Q8N884 522 aa13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 GMCL1Q96IK5 515 aa13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 SLC38A10Q9HBR0 1119 aa13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 SENP2Q9HC62 589 aa13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 DDX49Q9Y6V7 483 aaKnown RBP13.47□□□□□ -0.25
RAPGEF1-207ENST00000481260 ZNF536O15090 1300 aa13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 CYP21A2P08686 494 aa13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 SLC1A4P43007 532 aa13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 SNRNP48Q6IEG0 339 aaKnown RBP13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 CCDC174Q6PII3 467 aa13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 PRPF38AQ8NAV1 312 aaKnown RBP13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 SHCBP1Q8NEM2 672 aa13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 CCDC136Q96JN2 1154 aa13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 AGBL1Q96MI9 1066 aa13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 GPCPD1Q9NPB8 672 aa13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 TCP11L1Q9NUJ3 509 aa13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 ZSWIM5Q9P217 1185 aa13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 FEM1BQ9UK73 627 aa13.46□□□□□ -0.25
RAPGEF1-207ENST00000481260 RANBP2P49792 3224 aaKnown RBP13.46□□□□□ -0.26
RAPGEF1-207ENST00000481260 RAD50Q92878 1312 aa13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 SGPL1O95470 568 aa13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 HOXC6P09630 235 aa13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 GOLGA8HP0CJ92 632 aa13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 TOP1P11387 765 aaKnown RBP13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 IMMTQ16891 758 aaKnown RBP13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 CCDC96Q2M329 555 aa13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 CHST3Q7LGC8 479 aa13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 ENAHQ8N8S7 591 aaPredicted RBP13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 MMP19Q99542 508 aa13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 LSG1Q9H089 658 aaKnown RBP13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 CRISPLD2Q9H0B8 497 aa13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 HOMER2Q9NSB8 354 aa13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 PRR12Q9ULL5 1215 aa13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 IVNS1ABPQ9Y6Y0 642 aa13.45□□□□□ -0.26
RAPGEF1-207ENST00000481260 PDHBP11177 359 aa13.44□□□□□ -0.26
RAPGEF1-207ENST00000481260 ANO1Q5XXA6 986 aa13.44□□□□□ -0.26
RAPGEF1-207ENST00000481260 LHX8Q68G74 356 aa13.44□□□□□ -0.26
RAPGEF1-207ENST00000481260 DPP9Q86TI2 863 aa13.44□□□□□ -0.26
RAPGEF1-207ENST00000481260 ESR2Q92731 530 aa13.44□□□□□ -0.26
RAPGEF1-207ENST00000481260 FGD4Q96M96 766 aa13.44□□□□□ -0.26
RAPGEF1-207ENST00000481260 PURBQ96QR8 312 aaKnown RBP13.44□□□□□ -0.26
RAPGEF1-207ENST00000481260 ESYT1Q9BSJ8 1104 aa13.44□□□□□ -0.26
RAPGEF1-207ENST00000481260 MROH8Q9H579 483 aa13.44□□□□□ -0.26
RAPGEF1-207ENST00000481260 GPHNQ9NQX3 736 aaPredicted RBP13.44□□□□□ -0.26
RAPGEF1-207ENST00000481260 SYNPO2Q9UMS6 1093 aa13.44□□□□□ -0.26
RAPGEF1-207ENST00000481260 RBM8AQ9Y5S9 174 aaKnown RBP13.44□□□□□ -0.26
RAPGEF1-207ENST00000481260 RPTORQ8N122 1335 aa13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 ZBED4O75132 1171 aa13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 TFRCP02786 760 aaKnown RBP13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 FCER1AP12319 257 aa13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 STAT2P52630 851 aa13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 IKQ13123 557 aaPredicted RBP13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 ZNF792Q3KQV3 632 aa13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 MUM1L1Q5H9M0 696 aa13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 MAP4K1Q92918 833 aa13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 LENG1Q96BZ8 264 aaPredicted RBP13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 MAML3Q96JK9 1138 aa13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 ZSCAN10Q96SZ4 725 aaPredicted RBP13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 TEX13BQ9BXU2 312 aa13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 RNF41Q9H4P4 317 aaPredicted RBP13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 HMX1Q9NP08 348 aaPredicted RBP13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 CTNNA3Q9UI47 895 aa13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 ZNF236Q9UL36 1845 aa13.43□□□□□ -0.26
RAPGEF1-207ENST00000481260 CEP290O15078 2479 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 SMCHD1A6NHR9 2005 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 TNKSO95271 1327 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 E7EWF7 191 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 FARP2O94887 1054 aaPredicted RBP13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 SLC25A27O95847 323 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 SNHG28P0DPA3 235 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 ANTXR2P58335 489 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 ZNF543Q08ER8 600 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 SEC23AQ15436 765 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 SLC35G1Q2M3R5 365 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 BMP2KLQ5H9B9 411 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 SYDE2Q5VT97 1194 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 DCAF4Q8WV16 495 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 RUFY2Q8WXA3 655 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 UBA5Q9GZZ9 404 aa13.42□□□□□ -0.26
RAPGEF1-207ENST00000481260 ASTN1O14525 1302 aa13.41□□□□□ -0.26
RAPGEF1-207ENST00000481260 DNAJC25-GNG10A0A024R161 153 aa13.41□□□□□ -0.26
RAPGEF1-207ENST00000481260 ATP2A1O14983 1001 aa13.41□□□□□ -0.26
RAPGEF1-207ENST00000481260 STRNO43815 780 aa13.41□□□□□ -0.26
RAPGEF1-207ENST00000481260 PCP11498 1178 aaKnown RBP13.41□□□□□ -0.26
RAPGEF1-207ENST00000481260 CYBAP13498 195 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms