RNA–Protein interactions for RNA: ENST00000480598.1

LIMS4-202, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 679 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-202ENST00000480598 SNRNP48Q6IEG0 339 aaKnown RBP17.66■□□□□ 0.42
LIMS4-202ENST00000480598 TICAM2Q86XR7 235 aa17.66■□□□□ 0.42
LIMS4-202ENST00000480598 CPXCR1Q8N123 301 aa17.66■□□□□ 0.42
LIMS4-202ENST00000480598 PRPF38AQ8NAV1 312 aaKnown RBP17.66■□□□□ 0.42
LIMS4-202ENST00000480598 MAML3Q96JK9 1138 aa17.66■□□□□ 0.42
LIMS4-202ENST00000480598 TEX13BQ9BXU2 312 aa17.66■□□□□ 0.42
LIMS4-202ENST00000480598 SLC5A4Q9NY91 659 aa17.66■□□□□ 0.42
LIMS4-202ENST00000480598 ISY1Q9ULR0 285 aaKnown RBP17.66■□□□□ 0.42
LIMS4-202ENST00000480598 STX8Q9UNK0 236 aa17.66■□□□□ 0.42
LIMS4-202ENST00000480598 RIPK3Q9Y572 518 aa17.66■□□□□ 0.42
LIMS4-202ENST00000480598 BMP3P12645 472 aa17.65■□□□□ 0.42
LIMS4-202ENST00000480598 SLC4A3P48751 1232 aa17.65■□□□□ 0.42
LIMS4-202ENST00000480598 HAND2P61296 217 aa17.65■□□□□ 0.42
LIMS4-202ENST00000480598 RRP12Q5JTH9 1297 aaKnown RBP17.65■□□□□ 0.42
LIMS4-202ENST00000480598 PRAMEF19Q5SWL8 479 aa17.65■□□□□ 0.42
LIMS4-202ENST00000480598 ANO1Q5XXA6 986 aa17.65■□□□□ 0.42
LIMS4-202ENST00000480598 RASGRP2Q7LDG7 609 aa17.65■□□□□ 0.42
LIMS4-202ENST00000480598 RAVER2Q9HCJ3 691 aaKnown RBP17.65■□□□□ 0.42
LIMS4-202ENST00000480598 TOMM22Q9NS69 142 aa17.65■□□□□ 0.42
LIMS4-202ENST00000480598 FEM1BQ9UK73 627 aa17.65■□□□□ 0.42
LIMS4-202ENST00000480598 TRIOBPQ9H2D6 2365 aa17.65■□□□□ 0.42
LIMS4-202ENST00000480598 ORC4O43929 436 aa17.64■□□□□ 0.41
LIMS4-202ENST00000480598 ZBED4O75132 1171 aa17.64■□□□□ 0.41
LIMS4-202ENST00000480598 FGRP09769 529 aa17.64■□□□□ 0.41
LIMS4-202ENST00000480598 COL6A1P12109 1028 aa17.64■□□□□ 0.41
LIMS4-202ENST00000480598 COPB2P35606 906 aa17.64■□□□□ 0.41
LIMS4-202ENST00000480598 KCTD2Q14681 263 aa17.64■□□□□ 0.41
LIMS4-202ENST00000480598 C7orf61Q8IZ16 206 aa17.64■□□□□ 0.41
LIMS4-202ENST00000480598 SLC38A10Q9HBR0 1119 aa17.64■□□□□ 0.41
LIMS4-202ENST00000480598 CTDP1Q9Y5B0 961 aaPredicted RBP17.64■□□□□ 0.41
LIMS4-202ENST00000480598 PLXNA1Q9UIW2 1896 aa17.64■□□□□ 0.41
LIMS4-202ENST00000480598 RANBP2P49792 3224 aaKnown RBP17.64■□□□□ 0.41
LIMS4-202ENST00000480598 TMEM232C9JQI7 657 aa17.63■□□□□ 0.41
LIMS4-202ENST00000480598 MSCO60682 206 aa17.63■□□□□ 0.41
LIMS4-202ENST00000480598 MCCP23508 829 aa17.63■□□□□ 0.41
LIMS4-202ENST00000480598 PDE4AP27815 886 aa17.63■□□□□ 0.41
LIMS4-202ENST00000480598 ZNF792Q3KQV3 632 aa17.63■□□□□ 0.41
LIMS4-202ENST00000480598 CWC27Q6UX04 472 aaKnown RBP17.63■□□□□ 0.41
LIMS4-202ENST00000480598 GMCL1Q96IK5 515 aa17.63■□□□□ 0.41
LIMS4-202ENST00000480598 RBM27Q9P2N5 1060 aaKnown RBP17.63■□□□□ 0.41
LIMS4-202ENST00000480598 MTMR7Q9Y216 660 aa17.63■□□□□ 0.41
LIMS4-202ENST00000480598 ZMYM6O95789 1325 aa17.63■□□□□ 0.41
LIMS4-202ENST00000480598 ATP2A1O14983 1001 aa17.62■□□□□ 0.41
LIMS4-202ENST00000480598 SLC1A4P43007 532 aa17.62■□□□□ 0.41
LIMS4-202ENST00000480598 PPP4R3BQ5MIZ7 849 aa17.62■□□□□ 0.41
LIMS4-202ENST00000480598 KCTD1Q719H9 257 aa17.62■□□□□ 0.41
LIMS4-202ENST00000480598 TBC1D10CQ8IV04 446 aa17.62■□□□□ 0.41
LIMS4-202ENST00000480598 DIAPH3Q9NSV4 1193 aa17.62■□□□□ 0.41
LIMS4-202ENST00000480598 ZMYND8Q9ULU4 1186 aaPredicted RBP17.62■□□□□ 0.41
LIMS4-202ENST00000480598 SEPT4O43236 478 aa17.61■□□□□ 0.41
LIMS4-202ENST00000480598 NOVP48745 357 aa17.61■□□□□ 0.41
LIMS4-202ENST00000480598 STAT2P52630 851 aa17.61■□□□□ 0.41
LIMS4-202ENST00000480598 IKQ13123 557 aaPredicted RBP17.61■□□□□ 0.41
LIMS4-202ENST00000480598 STAG1Q8WVM7 1258 aa17.61■□□□□ 0.41
LIMS4-202ENST00000480598 TINF2Q9BSI4 451 aa17.61■□□□□ 0.41
LIMS4-202ENST00000480598 PCDH10Q9P2E7 1040 aa17.61■□□□□ 0.41
LIMS4-202ENST00000480598 DIS3Q9Y2L1 958 aaKnown RBP17.61■□□□□ 0.41
LIMS4-202ENST00000480598 TAL1P17542 331 aaPredicted RBP17.6■□□□□ 0.41
LIMS4-202ENST00000480598 FXR1P51114 621 aaKnown RBP eCLIP17.6■□□□□ 0.41
LIMS4-202ENST00000480598 MFAP1P55081 439 aaKnown RBP17.6■□□□□ 0.41
LIMS4-202ENST00000480598 LRRC26Q2I0M4 334 aa17.6■□□□□ 0.41
LIMS4-202ENST00000480598 AKNAD1Q5T1N1 836 aa17.6■□□□□ 0.41
LIMS4-202ENST00000480598 FAM160B2Q86V87 743 aa17.6■□□□□ 0.41
LIMS4-202ENST00000480598 SENP6Q9GZR1 1112 aaPredicted RBP17.6■□□□□ 0.41
LIMS4-202ENST00000480598 PRO3102Q9H379 93 aa17.6■□□□□ 0.41
LIMS4-202ENST00000480598 SMCHD1A6NHR9 2005 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 NEDD4P46934 1319 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 DNAJC25-GNG10A0A024R161 153 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 DNM1LO00429 736 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 GSPT1P15170 499 aaKnown RBP17.59■□□□□ 0.41
LIMS4-202ENST00000480598 SYN1P17600 705 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 OAZ1P54368 228 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 SNAP25P60880 206 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 CCDC96Q2M329 555 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 GJC2Q5T442 439 aaPredicted RBP17.59■□□□□ 0.41
LIMS4-202ENST00000480598 RCSD1Q6JBY9 416 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 MFSD6Q6ZSS7 791 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 CHURC1Q8WUH1 139 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 DDX11Q96FC9 970 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 HOMER2Q9NSB8 354 aa17.59■□□□□ 0.41
LIMS4-202ENST00000480598 ZNF536O15090 1300 aa17.58■□□□□ 0.4
LIMS4-202ENST00000480598 DNAH12Q6ZR08 3092 aa17.58■□□□□ 0.4
LIMS4-202ENST00000480598 HIP1O00291 1037 aa17.58■□□□□ 0.4
LIMS4-202ENST00000480598 MYCNP04198 464 aaPredicted RBP17.58■□□□□ 0.4
LIMS4-202ENST00000480598 AGBL1Q96MI9 1066 aa17.58■□□□□ 0.4
LIMS4-202ENST00000480598 TMEM47Q9BQJ4 181 aa17.58■□□□□ 0.4
LIMS4-202ENST00000480598 IL25Q9H293 177 aa17.58■□□□□ 0.4
LIMS4-202ENST00000480598 PRR12Q9ULL5 1215 aa17.58■□□□□ 0.4
LIMS4-202ENST00000480598 LAMA4Q16363 1823 aa17.58■□□□□ 0.4
LIMS4-202ENST00000480598 PLA2G6O60733 806 aa17.57■□□□□ 0.4
LIMS4-202ENST00000480598 ZNF865P0CJ78 1059 aaPredicted RBP17.57■□□□□ 0.4
LIMS4-202ENST00000480598 FDX1P10109 184 aa17.57■□□□□ 0.4
LIMS4-202ENST00000480598 TOP1P11387 765 aaKnown RBP17.57■□□□□ 0.4
LIMS4-202ENST00000480598 ATN1P54259 1190 aaPredicted RBP17.57■□□□□ 0.4
LIMS4-202ENST00000480598 TTC22Q5TAA0 569 aa17.57■□□□□ 0.4
LIMS4-202ENST00000480598 TTBK2Q6IQ55 1244 aa17.57■□□□□ 0.4
LIMS4-202ENST00000480598 CCDC174Q6PII3 467 aa17.57■□□□□ 0.4
LIMS4-202ENST00000480598 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.57■□□□□ 0.4
LIMS4-202ENST00000480598 ANKRD35Q8N283 1001 aa17.57■□□□□ 0.4
LIMS4-202ENST00000480598 CHST13Q8NET6 341 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms