RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 EPHA4P54764 986 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 FKBP1AP62942 108 aaKnown RBP7.95□□□□□ -1.14
USP48-208ENST00000479177 MTFR1Q15390 333 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 DACT2Q5SW24 774 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 NAA16Q6N069 864 aaPredicted RBP7.95□□□□□ -1.14
USP48-208ENST00000479177 KIAA1211Q6ZU35 1233 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 DZIP1Q86YF9 867 aaKnown RBP7.95□□□□□ -1.14
USP48-208ENST00000479177 LARGE2Q8N3Y3 721 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 TSEN2Q8NCE0 465 aaKnown RBP7.95□□□□□ -1.14
USP48-208ENST00000479177 GALNT6Q8NCL4 622 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 NEDD1Q8NHV4 660 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 SYT17Q9BSW7 474 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 DSCC1Q9BVC3 393 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 KRTAP9-2Q9BYQ4 174 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 SUGT1Q9Y2Z0 365 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 CDK5RAP2Q96SN8 1893 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 DDX60LQ5H9U9 1706 aaKnown RBP7.95□□□□□ -1.14
USP48-208ENST00000479177 TIAM2Q8IVF5 1701 aa7.95□□□□□ -1.14
USP48-208ENST00000479177 LAMB1P07942 1786 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 FOCADQ5VW36 1801 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 SBF1O95248 1867 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 NAV1Q8NEY1 1877 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 K7ELQ4 463 aaPredicted RBP7.94□□□□□ -1.14
USP48-208ENST00000479177 HSPA4P34932 840 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 PLA2G4AP47712 749 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 PTK7Q13308 1070 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 GNASQ5JWF2 1037 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 VPS53Q5VIR6 699 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 STRIP1Q5VSL9 837 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 TTLL5Q6EMB2 1281 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 RIPOR1Q6ZS17 1223 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 NIM1KQ8IY84 436 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 SIX5Q8N196 739 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 Q8N3U1 123 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 LCORLQ8N3X6 602 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 MIGA1Q8NAN2 632 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 RHBDD1Q8TEB9 315 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 MAP4K1Q92918 833 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 AIDAQ96BJ3 306 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 IL17RAQ96F46 866 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 STRBPQ96SI9 672 aaKnown RBP7.94□□□□□ -1.14
USP48-208ENST00000479177 RIOK1Q9BRS2 568 aaKnown RBP7.94□□□□□ -1.14
USP48-208ENST00000479177 MXD3Q9BW11 206 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 KCNQ5Q9NR82 932 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 PALD1Q9ULE6 856 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 DYRK1BQ9Y463 629 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 RBM8AQ9Y5S9 174 aaKnown RBP7.94□□□□□ -1.14
USP48-208ENST00000479177 MROH7-TTC4A0A0A0MT08 1334 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 GAKO14976 1311 aa7.94□□□□□ -1.14
USP48-208ENST00000479177 THBS1P07996 1170 aa7.93□□□□□ -1.14
USP48-208ENST00000479177 HSPD1P10809 573 aaKnown RBP7.93□□□□□ -1.14
USP48-208ENST00000479177 MCCP23508 829 aa7.93□□□□□ -1.14
USP48-208ENST00000479177 PRELPP51888 382 aa7.93□□□□□ -1.14
USP48-208ENST00000479177 GSTO1P78417 241 aa7.93□□□□□ -1.14
USP48-208ENST00000479177 TRIM22Q8IYM9 498 aa7.93□□□□□ -1.14
USP48-208ENST00000479177 KCNB2Q92953 911 aa7.93□□□□□ -1.14
USP48-208ENST00000479177 KIF2CQ99661 725 aa7.93□□□□□ -1.14
USP48-208ENST00000479177 VRTNQ9H8Y1 702 aa7.93□□□□□ -1.14
USP48-208ENST00000479177 ARMT1Q9H993 441 aa7.93□□□□□ -1.14
USP48-208ENST00000479177 EPB41L4AQ9HCS5 686 aaPredicted RBP7.93□□□□□ -1.14
USP48-208ENST00000479177 SCHIP1Q9P0W5 487 aaPredicted RBP7.93□□□□□ -1.14
USP48-208ENST00000479177 ZNRF3Q9ULT6 936 aa7.93□□□□□ -1.14
USP48-208ENST00000479177 ECM29Q5VYK3 1845 aa7.93□□□□□ -1.14
USP48-208ENST00000479177 ZMYM6O95789 1325 aa7.93□□□□□ -1.14
USP48-208ENST00000479177 RPAP1Q9BWH6 1393 aaPredicted RBP7.93□□□□□ -1.14
USP48-208ENST00000479177 BAZ2AQ9UIF9 1905 aaKnown RBP7.93□□□□□ -1.14
USP48-208ENST00000479177 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.92□□□□□ -1.14
USP48-208ENST00000479177 KRBA1A5PL33 1030 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 USP17L15C9J2P7 530 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 USP17L10C9JJH3 530 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 USP17L13C9JLJ4 530 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 USP17L12C9JPN9 530 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 USP17L11C9JVI0 530 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 USP17L21D6R901 530 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 USP17L18D6R9N7 530 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 USP17L22D6RA61 530 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 USP17L17D6RBQ6 530 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 USP17L19D6RCP7 530 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 USP17L20D6RJB6 530 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 PSMD14O00487 310 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 SLC27A2O14975 620 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 RAD17O75943 681 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 YBX3P16989 372 aaKnown RBP eCLIP7.92□□□□□ -1.143e-16■■□□□ 14.2
USP48-208ENST00000479177 GNAT2P19087 354 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 ANAPC15P60006 121 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 DYNLL1P63167 89 aaKnown RBP7.92□□□□□ -1.14
USP48-208ENST00000479177 USP17L24Q0WX57 530 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 DPYDQ12882 1025 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 NECTIN1Q15223 517 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 WDR44Q5JSH3 913 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 CREB3L3Q68CJ9 461 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 SLC9A9Q8IVB4 645 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 CCDC82Q8N4S0 544 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 ZDHHC1Q8WTX9 485 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 DAGLAQ9Y4D2 1042 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 SNX14Q9Y5W7 946 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 MYO3BQ8WXR4 1341 aa7.92□□□□□ -1.14
USP48-208ENST00000479177 GPR75-ASB3A0A0A6YYF3 556 aa7.91□□□□□ -1.14
USP48-208ENST00000479177 KRTAP9-6A0A140TA67 174 aa7.91□□□□□ -1.14
USP48-208ENST00000479177 GSG1L2A8MUP6 293 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms