RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 PTPN14Q15678 1187 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 STAG2Q8N3U4 1231 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 DPF2Q92785 391 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 ZMYND12Q9H0C1 365 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 USP17L3A6NCW0 530 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 USP17L4A6NCW7 530 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 PPEF1O14829 653 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-212ENST00000477970 TOP1P11387 765 aaKnown RBP13.87□□□□□ -0.19
PTPRF-212ENST00000477970 SLC35G1Q2M3R5 365 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 NOM1Q5C9Z4 860 aaKnown RBP13.87□□□□□ -0.19
PTPRF-212ENST00000477970 MFSD14BQ5SR56 506 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 SPATA1Q5VX52 437 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 USP17L1Q7RTZ2 530 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 SLC51AQ86UW1 340 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 MAPKAPK5Q8IW41 473 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 EYA3Q99504 573 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 INTS13Q9NVM9 706 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 PCDHA6Q9UN73 950 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 NFE2L3Q9Y4A8 694 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 PCDHA8Q9Y5H6 950 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 SBF1O95248 1867 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 ESYT2A0FGR8 921 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 CYTH3O43739 400 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 GTPBP6O43824 516 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-212ENST00000477970 ATP2B1P20020 1258 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 IL17AQ16552 155 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 CFAP100Q494V2 611 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 E4F1Q66K89 784 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-212ENST00000477970 WWC2Q6AWC2 1192 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 MED15Q96RN5 788 aa13.87□□□□□ -0.19
PTPRF-212ENST00000477970 DICER1Q9UPY3 1922 aaKnown RBP13.86□□□□□ -0.19
PTPRF-212ENST00000477970 CDKAL1Q5VV42 579 aa13.86□□□□□ -0.19
PTPRF-212ENST00000477970 A0A1B0GTH6 734 aa13.86□□□□□ -0.19
PTPRF-212ENST00000477970 VWA3AA6NCI4 1184 aa13.86□□□□□ -0.19
PTPRF-212ENST00000477970 USP27XA6NNY8 438 aa13.86□□□□□ -0.19
PTPRF-212ENST00000477970 KCNA3P22001 575 aa13.86□□□□□ -0.19
PTPRF-212ENST00000477970 GABPAQ06546 454 aa13.86□□□□□ -0.19
PTPRF-212ENST00000477970 ANKRD7Q92527 254 aa13.86□□□□□ -0.19
PTPRF-212ENST00000477970 GPR101Q96P66 508 aaPredicted RBP13.86□□□□□ -0.19
PTPRF-212ENST00000477970 MAGEF1Q9HAY2 307 aa13.86□□□□□ -0.19
PTPRF-212ENST00000477970 IGKV6D-41A0A0C4DH26 115 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 NR1I3Q14994 352 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 GRAMD1CQ8IYS0 662 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 PDILTQ8N807 584 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 RMND1Q9NWS8 449 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 GRIN3BO60391 1043 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 VEGFAP15692 232 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-212ENST00000477970 TXLNAP40222 546 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 TYW1BQ6NUM6 668 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 CTAGE1Q96RT6 745 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 CCSER1Q9C0I3 900 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 PPP1R3GB7ZBB8 358 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 APTXQ7Z2E3 356 aaKnown RBP13.85□□□□□ -0.19
PTPRF-212ENST00000477970 KRT25Q7Z3Z0 450 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 PPP1R13BQ96KQ4 1090 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 CUEDC2Q9H467 287 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 DAGLAQ9Y4D2 1042 aa13.85□□□□□ -0.19
PTPRF-212ENST00000477970 SYNRGQ9UMZ2 1314 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 CCDC194A0A1B0GVG4 234 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 PARP1P09874 1014 aaKnown RBP13.84□□□□□ -0.19
PTPRF-212ENST00000477970 NPR1P16066 1061 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 SPECC1LQ69YQ0 1117 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 TMEM139Q8IV31 216 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 SLC44A5Q8NCS7 719 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 AK8Q96MA6 479 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 SWAP70Q9UH65 585 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 KLRF2D3W0D1 207 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 ZNF710Q8N1W2 664 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 RIOX1Q9H6W3 641 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 SAP30BPQ9UHR5 308 aaKnown RBP13.84□□□□□ -0.19
PTPRF-212ENST00000477970 ADAMTS3O15072 1205 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 SNHG28P0DPA3 235 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 MCM7P33993 719 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 PDE6BP35913 854 aa13.84□□□□□ -0.19
PTPRF-212ENST00000477970 FKBP1AP62942 108 aaKnown RBP13.84□□□□□ -0.19
PTPRF-212ENST00000477970 GPKOWQ92917 476 aaPredicted RBP eCLIP13.84□□□□□ -0.19
PTPRF-212ENST00000477970 ARHGAP6O43182 974 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 GNA11P29992 359 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 PBX1P40424 430 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 MRIQ9BWK5 157 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 GTPBP4Q9BZE4 634 aaKnown RBP13.83□□□□□ -0.2
PTPRF-212ENST00000477970 RWDD2AQ9UIY3 292 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 ITIH6Q6UXX5 1313 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 STX10O60499 249 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 SRGNP10124 158 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 KCNB1Q14721 858 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 ASPRV1Q53RT3 343 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 PPP4R3BQ5MIZ7 849 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 ZNF658Q5TYW1 1059 aaPredicted RBP13.83□□□□□ -0.2
PTPRF-212ENST00000477970 KIF18AQ8NI77 898 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 RRP36Q96EU6 259 aaKnown RBP13.83□□□□□ -0.2
PTPRF-212ENST00000477970 DISC1Q9NRI5 854 aa13.83□□□□□ -0.2
PTPRF-212ENST00000477970 TMEM232C9JQI7 657 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 CD44P16070 742 aaKnown RBP13.82□□□□□ -0.2
PTPRF-212ENST00000477970 DPEP1P16444 411 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 YBX3P16989 372 aaKnown RBP eCLIP13.82□□□□□ -0.25e-7■□□□□ 8.5
PTPRF-212ENST00000477970 ALDH1B1P30837 517 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 PPP1R18Q6NYC8 613 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 HHIPL2Q6UWX4 724 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 DTHD1Q6ZMT9 781 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms