RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 SEC16BQ96JE7 1060 aa7.36□□□□□ -1.23
VPS50-214ENST00000477935 RC3H2Q9HBD1 1191 aaKnown RBP7.36□□□□□ -1.23
VPS50-214ENST00000477935 IGSF5Q9NSI5 407 aa7.36□□□□□ -1.23
VPS50-214ENST00000477935 LTBP4Q8N2S1 1624 aa7.36□□□□□ -1.23
VPS50-214ENST00000477935 UHRF1BP1Q6BDS2 1440 aa7.35□□□□□ -1.23
VPS50-214ENST00000477935 GIPRP48546 466 aa7.35□□□□□ -1.23
VPS50-214ENST00000477935 ZYXQ15942 572 aaKnown RBP7.35□□□□□ -1.23
VPS50-214ENST00000477935 NBPF9Q3BBW0 867 aa7.35□□□□□ -1.23
VPS50-214ENST00000477935 LRRN4CLQ8ND94 238 aa7.35□□□□□ -1.23
VPS50-214ENST00000477935 MKRN2Q9H000 416 aaKnown RBP7.35□□□□□ -1.23
VPS50-214ENST00000477935 DUSP13Q9UII6 198 aa7.35□□□□□ -1.23
VPS50-214ENST00000477935 UGGT2Q9NYU1 1516 aa7.34□□□□□ -1.23
VPS50-214ENST00000477935 TOM1O60784 492 aa7.34□□□□□ -1.23
VPS50-214ENST00000477935 ATF4P18848 351 aaPredicted RBP7.34□□□□□ -1.23
VPS50-214ENST00000477935 HSPA1LP34931 641 aa7.34□□□□□ -1.23
VPS50-214ENST00000477935 SNW1Q13573 536 aaKnown RBP7.34□□□□□ -1.23
VPS50-214ENST00000477935 UNC5AQ6ZN44 842 aa7.34□□□□□ -1.23
VPS50-214ENST00000477935 CREG2Q8IUH2 290 aa7.34□□□□□ -1.23
VPS50-214ENST00000477935 SHDQ96IW2 340 aa7.34□□□□□ -1.23
VPS50-214ENST00000477935 DHRS1Q96LJ7 313 aa7.34□□□□□ -1.23
VPS50-214ENST00000477935 ASCC2Q9H1I8 757 aaPredicted RBP7.34□□□□□ -1.23
VPS50-214ENST00000477935 CAPN10Q9HC96 672 aa7.34□□□□□ -1.23
VPS50-214ENST00000477935 SUCOQ9UBS9 1254 aaKnown RBP7.34□□□□□ -1.23
VPS50-214ENST00000477935 FHOD3Q2V2M9 1422 aa7.34□□□□□ -1.23
VPS50-214ENST00000477935 SETD1BQ9UPS6 1966 aaKnown RBP7.33□□□□□ -1.24
VPS50-214ENST00000477935 DENND4BO75064 1496 aaPredicted RBP7.33□□□□□ -1.24
VPS50-214ENST00000477935 MAGI2Q86UL8 1455 aa7.33□□□□□ -1.24
VPS50-214ENST00000477935 CEBPAP49715 358 aaPredicted RBP7.33□□□□□ -1.24
VPS50-214ENST00000477935 NMIQ13287 307 aaPredicted RBP7.33□□□□□ -1.24
VPS50-214ENST00000477935 CLEC16AQ2KHT3 1053 aa7.33□□□□□ -1.24
VPS50-214ENST00000477935 TMC3Q7Z5M5 1100 aa7.33□□□□□ -1.24
VPS50-214ENST00000477935 OR6P1Q8NGX9 317 aa7.33□□□□□ -1.24
VPS50-214ENST00000477935 CPLX3Q8WVH0 158 aa7.33□□□□□ -1.24
VPS50-214ENST00000477935 C9IYK1 514 aa7.32□□□□□ -1.24
VPS50-214ENST00000477935 ITGB5P18084 799 aa7.32□□□□□ -1.24
VPS50-214ENST00000477935 LTKP29376 864 aa7.32□□□□□ -1.24
VPS50-214ENST00000477935 PMS1P54277 932 aaKnown RBP7.32□□□□□ -1.24
VPS50-214ENST00000477935 PPFIBP1Q86W92 1011 aa7.32□□□□□ -1.24
VPS50-214ENST00000477935 ENOX1Q8TC92 643 aaKnown RBP7.32□□□□□ -1.24
VPS50-214ENST00000477935 ALPK1Q96QP1 1244 aa7.32□□□□□ -1.24
VPS50-214ENST00000477935 TINF2Q9BSI4 451 aa7.32□□□□□ -1.24
VPS50-214ENST00000477935 HDAC8Q9BY41 377 aa7.32□□□□□ -1.24
VPS50-214ENST00000477935 STRIP2Q9ULQ0 834 aa7.32□□□□□ -1.24
VPS50-214ENST00000477935 STRCQ7RTU9 1775 aa7.32□□□□□ -1.24
VPS50-214ENST00000477935 EGR3Q06889 387 aa7.31□□□□□ -1.24
VPS50-214ENST00000477935 GNL2Q13823 731 aaKnown RBP7.31□□□□□ -1.24
VPS50-214ENST00000477935 AUHQ13825 339 aaKnown RBP7.31□□□□□ -1.24
VPS50-214ENST00000477935 MED1Q15648 1581 aaPredicted RBP7.31□□□□□ -1.24
VPS50-214ENST00000477935 TDRD10Q5VZ19 366 aaKnown RBP7.31□□□□□ -1.24
VPS50-214ENST00000477935 TTC37Q6PGP7 1564 aa7.31□□□□□ -1.24
VPS50-214ENST00000477935 ATG4DQ86TL0 474 aaPredicted RBP7.31□□□□□ -1.24
VPS50-214ENST00000477935 TTC6Q86TZ1 520 aa7.31□□□□□ -1.24
VPS50-214ENST00000477935 C19orf47Q8N9M1 422 aaKnown RBP7.31□□□□□ -1.24
VPS50-214ENST00000477935 SYTL5Q8TDW5 730 aaPredicted RBP7.31□□□□□ -1.24
VPS50-214ENST00000477935 SMARCC1Q92922 1105 aaPredicted RBP7.31□□□□□ -1.24
VPS50-214ENST00000477935 PRDM14Q9GZV8 571 aa7.31□□□□□ -1.24
VPS50-214ENST00000477935 SLAMF8Q9P0V8 285 aa7.31□□□□□ -1.24
VPS50-214ENST00000477935 PCDHA11Q9Y5I1 949 aa7.31□□□□□ -1.24
VPS50-214ENST00000477935 SLC12A7Q9Y666 1083 aa7.31□□□□□ -1.24
VPS50-214ENST00000477935 PREX1Q8TCU6 1659 aa7.31□□□□□ -1.24
VPS50-214ENST00000477935 LTBP3Q9NS15 1303 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 SIGLEC6O43699 453 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 PAPLNO95428 1278 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 PRAMEF1O95521 474 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 RALGPS1Q5JS13 557 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 VPS37DQ86XT2 251 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 CCDC144CPQ8IYA2 1237 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 FAM169BQ8N8A8 192 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 DAGLBQ8NCG7 672 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 FLAD1Q8NFF5 587 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 C19orf73Q9NVV2 129 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 TMEM59LQ9UK28 342 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 FBXL21Q9UKT6 434 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 ZNF214Q9UL59 606 aaPredicted RBP7.3□□□□□ -1.24
VPS50-214ENST00000477935 CTNND2Q9UQB3 1225 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 PCDHB12Q9Y5F1 795 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 ARHGEF40Q8TER5 1519 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 GOLGA3Q08378 1498 aa7.3□□□□□ -1.24
VPS50-214ENST00000477935 DNAJC25-GNG10A0A024R161 153 aa7.29□□□□□ -1.24
VPS50-214ENST00000477935 A0A1W2PQH9 124 aa7.29□□□□□ -1.24
VPS50-214ENST00000477935 BIN1O00499 593 aa7.29□□□□□ -1.24
VPS50-214ENST00000477935 SHOXO15266 292 aa7.29□□□□□ -1.24
VPS50-214ENST00000477935 JUNBP17275 347 aaPredicted RBP7.29□□□□□ -1.24
VPS50-214ENST00000477935 DCAF15Q66K64 600 aa7.29□□□□□ -1.24
VPS50-214ENST00000477935 C7orf61Q8IZ16 206 aa7.29□□□□□ -1.24
VPS50-214ENST00000477935 ZNF655Q8N720 491 aaPredicted RBP7.29□□□□□ -1.24
VPS50-214ENST00000477935 ANAPC16Q96DE5 110 aa7.29□□□□□ -1.24
VPS50-214ENST00000477935 TCTN2Q96GX1 697 aa7.29□□□□□ -1.24
VPS50-214ENST00000477935 FAM86C1Q9NVL1 165 aa7.29□□□□□ -1.24
VPS50-214ENST00000477935 GFOD1Q9NXC2 390 aa7.29□□□□□ -1.24
VPS50-214ENST00000477935 MINPP1Q9UNW1 487 aa7.29□□□□□ -1.24
VPS50-214ENST00000477935 KIAA0556O60303 1618 aa7.28□□□□□ -1.24
VPS50-214ENST00000477935 ABCA9Q8IUA7 1624 aa7.28□□□□□ -1.24
VPS50-214ENST00000477935 TP53P04637 393 aaPredicted RBP7.28□□□□□ -1.24
VPS50-214ENST00000477935 GDNFP39905 211 aa7.28□□□□□ -1.24
VPS50-214ENST00000477935 CASP7P55210 303 aa7.28□□□□□ -1.24
VPS50-214ENST00000477935 PPP2R5EQ16537 467 aa7.28□□□□□ -1.24
VPS50-214ENST00000477935 BBS9Q3SYG4 887 aa7.28□□□□□ -1.24
VPS50-214ENST00000477935 AXDND1Q5T1B0 1012 aaPredicted RBP7.28□□□□□ -1.24
VPS50-214ENST00000477935 USHBP1Q8N6Y0 703 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms