RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 STK11IPQ8N1F8 1099 aa14.62□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 MSL3Q8N5Y2 521 aaKnown RBP14.62□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 SLC38A10Q9HBR0 1119 aa14.62□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 ZNF287Q9HBT7 754 aa14.62□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 TTLL1O95922 423 aa14.61□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 MX1P20591 662 aa14.61□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 TDO2P48775 406 aa14.61□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 RRP1P56182 461 aaKnown RBP14.61□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 PHF24Q9UPV7 400 aa14.61□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.61□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 TACC3Q9Y6A5 838 aa14.61□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 KBTBD13C9JR72 458 aa14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 POTEB2H3BUK9 544 aa14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 SNAI1O95863 264 aaPredicted RBP14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 APPP05067 770 aa14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 FGRP09769 529 aa14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 ADCYAP1R1P41586 468 aa14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 NOVP48745 357 aa14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 PPARAQ07869 468 aa14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 SNRNP48Q6IEG0 339 aaKnown RBP14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 ZNF467Q7Z7K2 595 aaPredicted RBP14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 FGD4Q96M96 766 aa14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 FEM1BQ9UK73 627 aa14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 SYNGAP1Q96PV0 1343 aa14.6□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 RAD21O60216 631 aa14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 PLA2G6O60733 806 aa14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 ADAMTS4O75173 837 aa14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 OAZ1P54368 228 aa14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 PDE4BQ07343 736 aa14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 HDAC1Q13547 482 aaPredicted RBP14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 CCSAPQ6IQ19 270 aaPredicted RBP14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 KLHDC9Q8NEP7 349 aa14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 FSD1Q9BTV5 496 aa14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 NACAP1Q9BZK3 213 aa14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 IL17RBQ9NRM6 502 aa14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 MTMR10Q9NXD2 777 aa14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 ANAPC4Q9UJX5 808 aa14.59□□□□□ -0.07
MSH5-SAPCD1-205ENST00000476085 ZBED4O75132 1171 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 FDX1P10109 184 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 RARBP10826 455 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 TFAP4Q01664 338 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ALX1Q15699 326 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 TRIM60Q495X7 471 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 SLFN13Q68D06 897 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 FAM109BQ6ICB4 259 aaPredicted RBP14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 TICAM2Q86XR7 235 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 DEFB123Q8N688 67 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 GMCL1Q96IK5 515 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 NAPBQ9H115 298 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 XPNPEP3Q9NQH7 507 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 INCENPQ9NQS7 918 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 PDLIM7Q9NR12 457 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ZNF536O15090 1300 aa14.58□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 TRIM43BA6NCK2 446 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 PGK1P00558 417 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 TSPY3P0CV98 308 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 TSPY8P0CW00 308 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 BMP3P12645 472 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 AKR1A1P14550 325 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 PDE1AP54750 535 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 VPS53Q5VIR6 699 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CCDC129Q6ZRS4 1044 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 Q7L0L9 218 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 SH3RF1Q7Z6J0 888 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CPXCR1Q8N123 301 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 LRRC47Q8N1G4 583 aaKnown RBP14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CHST13Q8NET6 341 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 FERMT2Q96AC1 680 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 KIFC2Q96AC6 838 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 TRIM43Q96BQ3 446 aaPredicted RBP14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 TSEN34Q9BSV6 310 aaKnown RBP14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 KATNBL1Q9H079 304 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 RAVER2Q9HCJ3 691 aaKnown RBP14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ATP11BQ9Y2G3 1177 aa14.57□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 SLC3A2P08195 630 aaKnown RBP14.56□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ITGB8P26012 769 aa14.56□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 NKX3-2P78367 333 aa14.56□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 TLE2Q04725 743 aa14.56□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ANKRD45Q5TZF3 282 aa14.56□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 RNF180Q86T96 592 aa14.56□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 EVI5LQ96CN4 794 aa14.56□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 DDX11Q96FC9 970 aa14.56□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CRBNQ96SW2 442 aa14.56□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 LBHD1Q9BQE6 289 aaPredicted RBP14.56□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 FBXO40Q9UH90 709 aa14.56□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CNPY2Q9Y2B0 182 aa14.56□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQ45 241 aaPredicted RBP14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQY0 241 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 TMEM232C9JQI7 657 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ADCY6O43306 1168 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ORC4O43929 436 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 DUSP11O75319 330 aaKnown RBP14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CST5P28325 142 aaPredicted RBP14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ANKRD33Q7Z3H0 272 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 FAM133AQ8N9E0 248 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 STAG1Q8WVM7 1258 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 LENG1Q96BZ8 264 aaPredicted RBP14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 TOX2Q96NM4 488 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 HELLSQ9NRZ9 838 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 FAM184BQ9ULE4 1060 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms