RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 ELP1O95163 1332 aa15.15■□□□□ 0.02
SKA3-206ENST00000475251 SYNRGQ9UMZ2 1314 aa15.15■□□□□ 0.02
SKA3-206ENST00000475251 RAD21O60216 631 aa15.14■□□□□ 0.01
SKA3-206ENST00000475251 HMMRO75330 724 aa15.14■□□□□ 0.01
SKA3-206ENST00000475251 TAL1P17542 331 aaPredicted RBP15.14■□□□□ 0.01
SKA3-206ENST00000475251 ADD2P35612 726 aa15.14■□□□□ 0.01
SKA3-206ENST00000475251 GRIN2CQ14957 1233 aa15.14■□□□□ 0.01
SKA3-206ENST00000475251 FBXO28Q9NVF7 368 aa15.14■□□□□ 0.01
SKA3-206ENST00000475251 PAG1Q9NWQ8 432 aa15.14■□□□□ 0.01
SKA3-206ENST00000475251 USP17L12C9JPN9 530 aa15.13■□□□□ 0.01
SKA3-206ENST00000475251 USP17L21D6R901 530 aa15.13■□□□□ 0.01
SKA3-206ENST00000475251 TNFRSF10AO00220 468 aa15.13■□□□□ 0.01
SKA3-206ENST00000475251 DUSP11O75319 330 aaKnown RBP15.13■□□□□ 0.01
SKA3-206ENST00000475251 RLBP1P12271 317 aa15.13■□□□□ 0.01
SKA3-206ENST00000475251 CST5P28325 142 aaPredicted RBP15.13■□□□□ 0.01
SKA3-206ENST00000475251 FAM83BQ5T0W9 1011 aa15.13■□□□□ 0.01
SKA3-206ENST00000475251 MFSD5Q6N075 450 aa15.13■□□□□ 0.01
SKA3-206ENST00000475251 MAMDC4Q6UXC1 1216 aa15.13■□□□□ 0.01
SKA3-206ENST00000475251 ZNF467Q7Z7K2 595 aaPredicted RBP15.13■□□□□ 0.01
SKA3-206ENST00000475251 TMEM199Q8N511 208 aa15.13■□□□□ 0.01
SKA3-206ENST00000475251 KLHDC9Q8NEP7 349 aa15.13■□□□□ 0.01
SKA3-206ENST00000475251 SLF1Q9BQI6 1058 aa15.13■□□□□ 0.01
SKA3-206ENST00000475251 ARPP21Q9UBL0 812 aaPredicted RBP15.13■□□□□ 0.01
SKA3-206ENST00000475251 ZHX1Q9UKY1 873 aaPredicted RBP15.13■□□□□ 0.01
SKA3-206ENST00000475251 CTDP1Q9Y5B0 961 aaPredicted RBP15.13■□□□□ 0.01
SKA3-206ENST00000475251 CDH23Q9H251 3354 aa15.12■□□□□ 0.01
SKA3-206ENST00000475251 PRUNE2Q8WUY3 3088 aa15.12■□□□□ 0.01
SKA3-206ENST00000475251 BAZ2AQ9UIF9 1905 aaKnown RBP15.12■□□□□ 0.01
SKA3-206ENST00000475251 TLR3O15455 904 aaKnown RBP15.12■□□□□ 0.01
SKA3-206ENST00000475251 PRKAB2O43741 272 aa15.12■□□□□ 0.01
SKA3-206ENST00000475251 MS4A1P11836 297 aa15.12■□□□□ 0.01
SKA3-206ENST00000475251 UBE3CQ15386 1083 aa15.12■□□□□ 0.01
SKA3-206ENST00000475251 KCNA10Q16322 511 aa15.12■□□□□ 0.01
SKA3-206ENST00000475251 SNRNP48Q6IEG0 339 aaKnown RBP15.12■□□□□ 0.01
SKA3-206ENST00000475251 ZSCAN25Q6NSZ9 544 aa15.12■□□□□ 0.01
SKA3-206ENST00000475251 PSRC1Q6PGN9 363 aaPredicted RBP15.12■□□□□ 0.01
SKA3-206ENST00000475251 CCDC129Q6ZRS4 1044 aa15.12■□□□□ 0.01
SKA3-206ENST00000475251 RPAP2Q8IXW5 612 aaPredicted RBP15.12■□□□□ 0.01
SKA3-206ENST00000475251 REPS2Q8NFH8 660 aa15.12■□□□□ 0.01
SKA3-206ENST00000475251 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.12■□□□□ 0.016e-14■■■■□ 20.1
SKA3-206ENST00000475251 TBX21Q9UL17 535 aa15.12■□□□□ 0.01
SKA3-206ENST00000475251 SLC4A4Q9Y6R1 1079 aa15.12■□□□□ 0.01
SKA3-206ENST00000475251 RAB11FIP3O75154 756 aa15.11■□□□□ 0.01
SKA3-206ENST00000475251 SNAI1O95863 264 aaPredicted RBP15.11■□□□□ 0.01
SKA3-206ENST00000475251 C6orf222P0C671 652 aaPredicted RBP15.11■□□□□ 0.01
SKA3-206ENST00000475251 AKNAD1Q5T1N1 836 aa15.11■□□□□ 0.01
SKA3-206ENST00000475251 CCSAPQ6IQ19 270 aaPredicted RBP15.11■□□□□ 0.01
SKA3-206ENST00000475251 POTEHQ6S545 545 aa15.11■□□□□ 0.01
SKA3-206ENST00000475251 PRPF38AQ8NAV1 312 aaKnown RBP15.11■□□□□ 0.01
SKA3-206ENST00000475251 ATXN2LQ8WWM7 1075 aaKnown RBP15.11■□□□□ 0.01
SKA3-206ENST00000475251 VTI1AQ96AJ9 217 aa15.11■□□□□ 0.01
SKA3-206ENST00000475251 LENG1Q96BZ8 264 aaPredicted RBP15.11■□□□□ 0.01
SKA3-206ENST00000475251 MTIF3Q9H2K0 278 aaKnown RBP15.11■□□□□ 0.01
SKA3-206ENST00000475251 ABHD16BQ9H3Z7 469 aa15.11■□□□□ 0.01
SKA3-206ENST00000475251 FBXO40Q9UH90 709 aa15.11■□□□□ 0.01
SKA3-206ENST00000475251 DNAJC25-GNG10A0A024R161 153 aa15.1■□□□□ 0.01
SKA3-206ENST00000475251 CYP2D7A0A087X1C5 515 aa15.1■□□□□ 0.01
SKA3-206ENST00000475251 A0A0U1RQG5 324 aaPredicted RBP15.1■□□□□ 0.01
SKA3-206ENST00000475251 APBB1O00213 710 aa15.1■□□□□ 0.01
SKA3-206ENST00000475251 ATP2A1O14983 1001 aa15.1■□□□□ 0.01
SKA3-206ENST00000475251 ZBED4O75132 1171 aa15.1■□□□□ 0.01
SKA3-206ENST00000475251 ATP5JP18859 108 aa15.1■□□□□ 0.01
SKA3-206ENST00000475251 ACVR2BQ13705 512 aa15.1■□□□□ 0.01
SKA3-206ENST00000475251 CTR9Q6PD62 1173 aa15.1■□□□□ 0.01
SKA3-206ENST00000475251 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.1■□□□□ 0.01
SKA3-206ENST00000475251 BOLA2Q9H3K6 86 aa15.1■□□□□ 0.01
SKA3-206ENST00000475251 SPTBN5Q9NRC6 3674 aaKnown RBP15.1■□□□□ 0.01
SKA3-206ENST00000475251 ZBED9Q6R2W3 1325 aa15.1■□□□□ 0.01
SKA3-206ENST00000475251 ARVCFO00192 962 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 ASGR1P07306 291 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 CDK7P50613 346 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 RAB30Q15771 203 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 TMEM240Q5SV17 173 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 ANKRD35Q8N283 1001 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 USP38Q8NB14 1042 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 HAUS7Q99871 368 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 PBX4Q9BYU1 374 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 MKNK2Q9HBH9 465 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.09■□□□□ 0.01
SKA3-206ENST00000475251 NYAP2Q9P242 653 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 THEGQ9P2T0 379 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 MSRAQ9UJ68 235 aa15.09■□□□□ 0.01
SKA3-206ENST00000475251 F5H6K3 240 aa15.08■□□□□ 0
SKA3-206ENST00000475251 OAZ1P54368 228 aa15.08■□□□□ 0
SKA3-206ENST00000475251 GJA9P57773 515 aa15.08■□□□□ 0
SKA3-206ENST00000475251 KLRC3Q07444 240 aa15.08■□□□□ 0
SKA3-206ENST00000475251 GNASQ5JWF2 1037 aa15.08■□□□□ 0
SKA3-206ENST00000475251 RASIP1Q5U651 963 aa15.08■□□□□ 0
SKA3-206ENST00000475251 CHST13Q8NET6 341 aa15.08■□□□□ 0
SKA3-206ENST00000475251 IL27Q8NEV9 243 aa15.08■□□□□ 0
SKA3-206ENST00000475251 SEZ6LQ9BYH1 1024 aa15.08■□□□□ 0
SKA3-206ENST00000475251 BCL11AQ9H165 835 aa15.08■□□□□ 0
SKA3-206ENST00000475251 UPF3AQ9H1J1 476 aaKnown RBP15.08■□□□□ 0
SKA3-206ENST00000475251 CHMP4BQ9H444 224 aaKnown RBP15.08■□□□□ 0
SKA3-206ENST00000475251 ZNF287Q9HBT7 754 aa15.08■□□□□ 0
SKA3-206ENST00000475251 SYNPO2Q9UMS6 1093 aa15.08■□□□□ 0
SKA3-206ENST00000475251 NDUFB10O96000 172 aa15.07■□□□□ 0
SKA3-206ENST00000475251 FDX1P10109 184 aa15.07■□□□□ 0
SKA3-206ENST00000475251 CSF2RAP15509 400 aa15.07■□□□□ 0
SKA3-206ENST00000475251 COL9A1P20849 921 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms