RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 CHURC1Q8WUH1 139 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 STAG1Q8WVM7 1258 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 KIFC2Q96AC6 838 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 MMP19Q99542 508 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 DSCC1Q9BVC3 393 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 RNF41Q9H4P4 317 aaPredicted RBP14.14□□□□□ -0.15
SYNE1-221ENST00000472563 TOMM22Q9NS69 142 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 TMEM232C9JQI7 657 aa14.13□□□□□ -0.15
SYNE1-221ENST00000472563 MNX1P50219 401 aaPredicted RBP14.13□□□□□ -0.15
SYNE1-221ENST00000472563 RRP12Q5JTH9 1297 aaKnown RBP14.13□□□□□ -0.15
SYNE1-221ENST00000472563 SNRNP48Q6IEG0 339 aaKnown RBP14.13□□□□□ -0.15
SYNE1-221ENST00000472563 RCSD1Q6JBY9 416 aa14.13□□□□□ -0.15
SYNE1-221ENST00000472563 NECAB2Q7Z6G3 386 aa14.13□□□□□ -0.15
SYNE1-221ENST00000472563 FAM160B2Q86V87 743 aa14.13□□□□□ -0.15
SYNE1-221ENST00000472563 TBC1D10CQ8IV04 446 aa14.13□□□□□ -0.15
SYNE1-221ENST00000472563 DPF3Q92784 378 aa14.13□□□□□ -0.15
SYNE1-221ENST00000472563 PAWRQ96IZ0 340 aaKnown RBP14.13□□□□□ -0.15
SYNE1-221ENST00000472563 DIS3Q9Y2L1 958 aaKnown RBP14.13□□□□□ -0.15
SYNE1-221ENST00000472563 CTDP1Q9Y5B0 961 aaPredicted RBP14.13□□□□□ -0.15
SYNE1-221ENST00000472563 MGAMO43451 1857 aa14.12□□□□□ -0.15
SYNE1-221ENST00000472563 MSCO60682 206 aa14.12□□□□□ -0.15
SYNE1-221ENST00000472563 TOP1P11387 765 aaKnown RBP14.12□□□□□ -0.15
SYNE1-221ENST00000472563 CYBAP13498 195 aa14.12□□□□□ -0.15
SYNE1-221ENST00000472563 STAT2P52630 851 aa14.12□□□□□ -0.15
SYNE1-221ENST00000472563 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.12□□□□□ -0.15
SYNE1-221ENST00000472563 CPXCR1Q8N123 301 aa14.12□□□□□ -0.15
SYNE1-221ENST00000472563 TRPV1Q8NER1 839 aa14.12□□□□□ -0.15
SYNE1-221ENST00000472563 DIS3LQ8TF46 1054 aaKnown RBP14.12□□□□□ -0.15
SYNE1-221ENST00000472563 MAML3Q96JK9 1138 aa14.12□□□□□ -0.15
SYNE1-221ENST00000472563 TTC14Q96N46 770 aa14.12□□□□□ -0.15
SYNE1-221ENST00000472563 TMEM47Q9BQJ4 181 aa14.12□□□□□ -0.15
SYNE1-221ENST00000472563 CTNNA3Q9UI47 895 aa14.12□□□□□ -0.15
SYNE1-221ENST00000472563 RIPK3Q9Y572 518 aa14.12□□□□□ -0.15
SYNE1-221ENST00000472563 GREB1LQ9C091 1923 aaPredicted RBP14.11□□□□□ -0.15
SYNE1-221ENST00000472563 H0YGN5 161 aa14.11□□□□□ -0.15
SYNE1-221ENST00000472563 PGK2P07205 417 aa14.11□□□□□ -0.15
SYNE1-221ENST00000472563 ZNF792Q3KQV3 632 aa14.11□□□□□ -0.15
SYNE1-221ENST00000472563 DCAF4Q8WV16 495 aa14.11□□□□□ -0.15
SYNE1-221ENST00000472563 ESR2Q92731 530 aa14.11□□□□□ -0.15
SYNE1-221ENST00000472563 RAVER2Q9HCJ3 691 aaKnown RBP14.11□□□□□ -0.15
SYNE1-221ENST00000472563 FBXO40Q9UH90 709 aa14.11□□□□□ -0.15
SYNE1-221ENST00000472563 DDX20Q9UHI6 824 aaKnown RBP14.11□□□□□ -0.15
SYNE1-221ENST00000472563 NRBP1Q9UHY1 535 aa14.11□□□□□ -0.15
SYNE1-221ENST00000472563 ISY1Q9ULR0 285 aaKnown RBP14.11□□□□□ -0.15
SYNE1-221ENST00000472563 NR2E3Q9Y5X4 410 aa14.11□□□□□ -0.15
SYNE1-221ENST00000472563 RAD50Q92878 1312 aa14.11□□□□□ -0.15
SYNE1-221ENST00000472563 A0A0G2JMZ2 1700 aa14.1□□□□□ -0.15
SYNE1-221ENST00000472563 CHMLP26374 656 aa14.1□□□□□ -0.15
SYNE1-221ENST00000472563 IKQ13123 557 aaPredicted RBP14.1□□□□□ -0.15
SYNE1-221ENST00000472563 IMMTQ16891 758 aaKnown RBP14.1□□□□□ -0.15
SYNE1-221ENST00000472563 CHST13Q8NET6 341 aa14.1□□□□□ -0.15
SYNE1-221ENST00000472563 RUFY2Q8WXA3 655 aa14.1□□□□□ -0.15
SYNE1-221ENST00000472563 IL25Q9H293 177 aa14.1□□□□□ -0.15
SYNE1-221ENST00000472563 C11orf49Q9H6J7 331 aa14.1□□□□□ -0.15
SYNE1-221ENST00000472563 PLXNB2O15031 1838 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 SEPT4O43236 478 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 COL6A1P12109 1028 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 CNGA1P29973 690 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 CCDC178Q5BJE1 867 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 BTNL9Q6UXG8 535 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 KCTD1Q719H9 257 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 DGKHQ86XP1 1220 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 MSL3Q8N5Y2 521 aaKnown RBP14.09□□□□□ -0.15
SYNE1-221ENST00000472563 CHMP4CQ96CF2 233 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 DDX11Q96FC9 970 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 TINF2Q9BSI4 451 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 PRR12Q9ULL5 1215 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 RLFQ13129 1914 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 NEDD4P46934 1319 aa14.09□□□□□ -0.15
SYNE1-221ENST00000472563 DOCK3Q8IZD9 2030 aa14.08□□□□□ -0.15
SYNE1-221ENST00000472563 DNAJC25-GNG10A0A024R161 153 aa14.08□□□□□ -0.16
SYNE1-221ENST00000472563 EVI5O60447 810 aa14.08□□□□□ -0.16
SYNE1-221ENST00000472563 SLC4A3P48751 1232 aa14.08□□□□□ -0.16
SYNE1-221ENST00000472563 CCDC96Q2M329 555 aa14.08□□□□□ -0.16
SYNE1-221ENST00000472563 TKFCQ3LXA3 575 aa14.08□□□□□ -0.16
SYNE1-221ENST00000472563 RASGRP2Q7LDG7 609 aa14.08□□□□□ -0.16
SYNE1-221ENST00000472563 ANKS1AQ92625 1134 aa14.08□□□□□ -0.16
SYNE1-221ENST00000472563 ZNF536O15090 1300 aa14.08□□□□□ -0.16
SYNE1-221ENST00000472563 KDM4AO75164 1064 aa14.07□□□□□ -0.16
SYNE1-221ENST00000472563 PRAMEF19Q5SWL8 479 aa14.07□□□□□ -0.16
SYNE1-221ENST00000472563 ZNF467Q7Z7K2 595 aaPredicted RBP14.07□□□□□ -0.16
SYNE1-221ENST00000472563 IQCA1Q86XH1 822 aa14.07□□□□□ -0.16
SYNE1-221ENST00000472563 ANKRD35Q8N283 1001 aa14.07□□□□□ -0.16
SYNE1-221ENST00000472563 AGBL1Q96MI9 1066 aa14.07□□□□□ -0.16
SYNE1-221ENST00000472563 KRT23Q9C075 422 aa14.07□□□□□ -0.16
SYNE1-221ENST00000472563 CNNM2Q9H8M5 875 aa14.07□□□□□ -0.16
SYNE1-221ENST00000472563 MTMR7Q9Y216 660 aa14.07□□□□□ -0.16
SYNE1-221ENST00000472563 ZNF236Q9UL36 1845 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 SGSM2O43147 1006 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 SNHG28P0DPA3 235 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 PDHBP11177 359 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 TTBK2Q6IQ55 1244 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 MAMDC4Q6UXC1 1216 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 CENPQQ7L2Z9 268 aaPredicted RBP14.06□□□□□ -0.16
SYNE1-221ENST00000472563 ARRDC4Q8NCT1 418 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 ACAD9Q9H845 621 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 HOMER2Q9NSB8 354 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 RNF146Q9NTX7 359 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 ZSWIM5Q9P217 1185 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 CNPY2Q9Y2B0 182 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms