RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 DSCC1Q9BVC3 393 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 UPF3AQ9H1J1 476 aaKnown RBP14.56□□□□□ -0.08
COL6A3-209ENST00000472056 DIS3Q9Y2L1 958 aaKnown RBP14.56□□□□□ -0.08
COL6A3-209ENST00000472056 FOXP2O15409 715 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 PDE11AQ9HCR9 933 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 CHPF2Q9P2E5 772 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 IRX1P78414 480 aaPredicted RBP14.55□□□□□ -0.08
COL6A3-209ENST00000472056 C6orf118Q5T5N4 469 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 SLFN12Q8IYM2 578 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 CCDC85AQ96PX6 553 aaPredicted RBP14.55□□□□□ -0.08
COL6A3-209ENST00000472056 ZNF215Q9UL58 517 aaPredicted RBP14.55□□□□□ -0.08
COL6A3-209ENST00000472056 ARHGEF9O43307 516 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 ATF2P15336 505 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 TNNI2P48788 182 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 IFT88Q13099 833 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 GIMAP4Q9NUV9 329 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 PCDHB13Q9Y5F0 798 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 ZFXP17010 805 aaPredicted RBP14.55□□□□□ -0.08
COL6A3-209ENST00000472056 RAD51AP2Q09MP3 1159 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 STOML1Q9UBI4 398 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 SERPINB10P48595 397 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 PPP2R5DQ14738 602 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 SCYL3Q8IZE3 742 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 APPBP2Q92624 585 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 LARP6Q9BRS8 491 aaKnown RBP14.55□□□□□ -0.08
COL6A3-209ENST00000472056 RTEL1Q9NZ71 1219 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 SLC27A2O14975 620 aa14.55□□□□□ -0.08
COL6A3-209ENST00000472056 RSBN1LQ6PCB5 846 aaPredicted RBP14.54□□□□□ -0.08
COL6A3-209ENST00000472056 VPS37BQ9H9H4 285 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 EPN1Q9Y6I3 576 aaPredicted RBP14.54□□□□□ -0.08
COL6A3-209ENST00000472056 LAMC1P11047 1609 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 MRPL44Q9H9J2 332 aaKnown RBP14.54□□□□□ -0.08
COL6A3-209ENST00000472056 ANKFY1Q9P2R3 1169 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 NOS1P29475 1434 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 ARHGEF35A5YM69 484 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 MORC4Q8TE76 937 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 RAB20Q9NX57 234 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 AFG3L2Q9Y4W6 797 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 SRGAP2BP0DMP2 458 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 ARHGEF10LQ9HCE6 1279 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 PPP1R12AO14974 1030 aaPredicted RBP14.54□□□□□ -0.08
COL6A3-209ENST00000472056 CMA1P23946 247 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 BRDTQ58F21 947 aaPredicted RBP14.54□□□□□ -0.08
COL6A3-209ENST00000472056 C6orf229H3BNL8 230 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 ADCY8P40145 1251 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 TRAPPC10P48553 1259 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 ATG16L1Q676U5 607 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 USP6NLQ92738 828 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 BAZ2BQ9UIF8 2168 aaKnown RBP14.54□□□□□ -0.08
COL6A3-209ENST00000472056 F8W8V4 182 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 CCT5P48643 541 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 MPRIPQ6WCQ1 1025 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 TADA2BQ86TJ2 420 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 AK8Q96MA6 479 aa14.54□□□□□ -0.08
COL6A3-209ENST00000472056 BAG2O95816 211 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 INHBAP08476 426 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 PYGBP11216 843 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 KRT80Q6KB66 452 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 NLRP3Q96P20 1036 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 RNF123Q5XPI4 1314 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 REXO1Q8N1G1 1221 aaKnown RBP14.53□□□□□ -0.08
COL6A3-209ENST00000472056 LRRC43Q8N309 656 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 SPDL1Q96EA4 605 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 TTC19Q6DKK2 380 aaPredicted RBP14.53□□□□□ -0.08
COL6A3-209ENST00000472056 ZNF713Q8N859 430 aaPredicted RBP14.53□□□□□ -0.08
COL6A3-209ENST00000472056 SPATA1Q5VX52 437 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 EEF1DP29692 281 aaKnown RBP14.53□□□□□ -0.08
COL6A3-209ENST00000472056 MORC3Q14149 939 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 GSDMAQ96QA5 445 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 MAD1L1Q9Y6D9 718 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 KCNK3O14649 394 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 BRD2P25440 801 aaKnown RBP14.53□□□□□ -0.08
COL6A3-209ENST00000472056 MAGEB6Q8N7X4 407 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 ARMC2Q8NEN0 867 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 GUCY2CP25092 1073 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 PPWD1Q96BP3 646 aaKnown RBP14.53□□□□□ -0.08
COL6A3-209ENST00000472056 KLHL29Q96CT2 875 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 TTC25Q96NG3 672 aa14.53□□□□□ -0.08
COL6A3-209ENST00000472056 MCM9Q9NXL9 1143 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 STK17AQ9UEE5 414 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 IGSF3O75054 1194 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 NSFP46459 744 aaKnown RBP14.52□□□□□ -0.08
COL6A3-209ENST00000472056 PDE6CP51160 858 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 MAP3K10Q02779 954 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 CAV1Q03135 178 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 TMCO4Q5TGY1 634 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 GRAMD4Q6IC98 578 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 TTLL7Q6ZT98 887 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 NBPF5PQ86XG9 351 aaPredicted RBP14.52□□□□□ -0.08
COL6A3-209ENST00000472056 KLHL7Q8IXQ5 586 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 TDRD7Q8NHU6 1098 aaKnown RBP14.52□□□□□ -0.08
COL6A3-209ENST00000472056 STAMBPL1Q96FJ0 436 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 HDAC4P56524 1084 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 RAB44Q7Z6P3 723 aaPredicted RBP14.52□□□□□ -0.08
COL6A3-209ENST00000472056 CCDC138Q96M89 665 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 SLF1Q9BQI6 1058 aa14.52□□□□□ -0.08
COL6A3-209ENST00000472056 LDHBP07195 334 aaKnown RBP14.52□□□□□ -0.09
COL6A3-209ENST00000472056 OCA2Q04671 838 aa14.52□□□□□ -0.09
COL6A3-209ENST00000472056 PUM3Q15397 648 aaKnown RBP14.52□□□□□ -0.09
COL6A3-209ENST00000472056 TAF12Q16514 161 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms