RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 HPXP02790 462 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 RAG1P15918 1043 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 LTKP29376 864 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 POLR2BP30876 1174 aaKnown RBP2.54□□□□□ -2
UBXN4-207ENST00000471246 TRHRP34981 398 aaPredicted RBP2.54□□□□□ -2
UBXN4-207ENST00000471246 ZNF76P36508 570 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 FANCCQ00597 558 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 MLECQ14165 292 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 GAB4Q2WGN9 574 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 SEZ6Q53EL9 994 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 ARSHQ5FYA8 562 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 GK5Q6ZS86 529 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 TSPYL5Q86VY4 417 aaPredicted RBP2.54□□□□□ -2
UBXN4-207ENST00000471246 IRF2BP1Q8IU81 584 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 CREG2Q8IUH2 290 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 KIAA0825Q8IV33 1275 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 TMEM87AQ8NBN3 555 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 CCDC120Q96HB5 630 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 GPR62Q9BZJ7 368 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 DUSP15Q9H1R2 295 aaPredicted RBP2.54□□□□□ -2
UBXN4-207ENST00000471246 ZNF552Q9H707 407 aaPredicted RBP2.54□□□□□ -2
UBXN4-207ENST00000471246 SP110Q9HB58 689 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 GPATCH2Q9NW75 528 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 GMIPQ9P107 970 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 DUSP13Q9UII6 198 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 TMEM59LQ9UK28 342 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 KCNH3Q9ULD8 1083 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 PCDHGB7Q9Y5F8 929 aa2.54□□□□□ -2
UBXN4-207ENST00000471246 RBM47A0AV96 593 aaKnown RBP2.53□□□□□ -2
UBXN4-207ENST00000471246 SHISA3A0PJX4 238 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 RGS13O14921 159 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 UBOX5O94941 541 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 GBP1P32455 592 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 CHMP4BP1P59074 171 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 RNF4P78317 190 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 CLCQ05315 142 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 EGR3Q06889 387 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 ZNF394Q53GI3 561 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 RALGPS1Q5JS13 557 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 ZFYVE27Q5T4F4 411 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 NLRC3Q7RTR2 1065 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 USP48Q86UV5 1035 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 EAF1Q96JC9 268 aaPredicted RBP2.53□□□□□ -2
UBXN4-207ENST00000471246 SIGLEC10Q96LC7 697 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 SPON2Q9BUD6 331 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 NT5C1AQ9BXI3 368 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 BACH2Q9BYV9 841 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 PCED1AQ9H1Q7 454 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 EHMT1Q9H9B1 1298 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 METTL5Q9NRN9 209 aaKnown RBP2.53□□□□□ -2
UBXN4-207ENST00000471246 PCDHA11Q9Y5I1 949 aa2.53□□□□□ -2
UBXN4-207ENST00000471246 MEIS3P2A8K0S8 358 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 MCM4P33991 863 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 ZNF165P49910 485 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 HK2P52789 917 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 ATXN1P54253 815 aaKnown RBP2.52□□□□□ -2.01
UBXN4-207ENST00000471246 NMIQ13287 307 aaPredicted RBP2.52□□□□□ -2.01
UBXN4-207ENST00000471246 SNW1Q13573 536 aaKnown RBP2.52□□□□□ -2.01
UBXN4-207ENST00000471246 CLEC16AQ2KHT3 1053 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 CDCP2Q5VXM1 449 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 CPZQ66K79 652 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 SLITRK4Q8IW52 837 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 REXO1Q8N1G1 1221 aaKnown RBP2.52□□□□□ -2.01
UBXN4-207ENST00000471246 TP53I13Q8NBR0 393 aaPredicted RBP2.52□□□□□ -2.01
UBXN4-207ENST00000471246 NKD1Q969G9 470 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 VWCEQ96DN2 955 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 ATG4CQ96DT6 458 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 ZNF512BQ96KM6 892 aaPredicted RBP2.52□□□□□ -2.01
UBXN4-207ENST00000471246 HDAC8Q9BY41 377 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP2.52□□□□□ -2.01
UBXN4-207ENST00000471246 ANTXR1Q9H6X2 564 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 CNNM2Q9H8M5 875 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 SMPD4Q9NXE4 827 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 ZNRF3Q9ULT6 936 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 IRAK3Q9Y616 596 aa2.52□□□□□ -2.01
UBXN4-207ENST00000471246 TNFRSF10CO14798 259 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 CLEC3AO75596 197 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 ZGLP1P0C6A0 271 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 NME1P15531 152 aaKnown RBP2.51□□□□□ -2.01
UBXN4-207ENST00000471246 VAMP1P23763 118 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 CCNFP41002 786 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 TEKQ02763 1124 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 NBPF12Q5TAG4 269 aaPredicted RBP2.51□□□□□ -2.01
UBXN4-207ENST00000471246 CRIP3Q6Q6R5 217 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 TMC3Q7Z5M5 1100 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 RNF34Q969K3 372 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 SLC6A18Q96N87 628 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 ASCC2Q9H1I8 757 aaPredicted RBP2.51□□□□□ -2.01
UBXN4-207ENST00000471246 SLC6A17Q9H1V8 727 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 ADAMTS10Q9H324 1103 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 PCSK5Q92824 1860 aa2.51□□□□□ -2.01
UBXN4-207ENST00000471246 FAM86C2PA6NEL3 165 aa2.5□□□□□ -2.01
UBXN4-207ENST00000471246 SCAMP3O14828 347 aaKnown RBP2.5□□□□□ -2.01
UBXN4-207ENST00000471246 PRAMEF1O95521 474 aa2.5□□□□□ -2.01
UBXN4-207ENST00000471246 ACRP10323 421 aa2.5□□□□□ -2.01
UBXN4-207ENST00000471246 ZNF20P17024 532 aa2.5□□□□□ -2.01
UBXN4-207ENST00000471246 RACK1P63244 317 aaKnown RBP2.5□□□□□ -2.01
UBXN4-207ENST00000471246 RAD51AP2Q09MP3 1159 aa2.5□□□□□ -2.01
UBXN4-207ENST00000471246 TRIM26Q12899 539 aaPredicted RBP2.5□□□□□ -2.01
UBXN4-207ENST00000471246 DUSP4Q13115 394 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms