RNA–Protein interactions for RNA: ENST00000470837.1

CCM2-204, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-204ENST00000470837 TTBK2Q6IQ55 1244 aa11.25□□□□□ -0.61
CCM2-204ENST00000470837 TNPO1Q92973 898 aaKnown RBP11.25□□□□□ -0.61
CCM2-204ENST00000470837 OTUD5Q96G74 571 aa11.25□□□□□ -0.61
CCM2-204ENST00000470837 PIGSQ96S52 555 aa11.25□□□□□ -0.61
CCM2-204ENST00000470837 NUP88Q99567 741 aaPredicted RBP11.25□□□□□ -0.61
CCM2-204ENST00000470837 RIOX1Q9H6W3 641 aa11.25□□□□□ -0.61
CCM2-204ENST00000470837 MYH8P13535 1937 aa11.25□□□□□ -0.61
CCM2-204ENST00000470837 ZBTB5O15062 677 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 PLA2G6O60733 806 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 NCLP19338 710 aaKnown RBP11.24□□□□□ -0.61
CCM2-204ENST00000470837 GNA11P29992 359 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 KRT2P35908 639 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 HMGCS2P54868 508 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 CSPP1Q1MSJ5 1256 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 GALNT17Q6IS24 598 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 RASGRP2Q7LDG7 609 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 BRAPQ7Z569 592 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 FERMT3Q86UX7 667 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 SMC1BQ8NDV3 1235 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 BICD2Q8TD16 824 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 KIFC2Q96AC6 838 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 CPVLQ9H3G5 476 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 C6orf50Q9HD87 102 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 BARHL2Q9NY43 387 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 VPS54Q9P1Q0 977 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 PNMA2Q9UL42 364 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 AFG3L2Q9Y4W6 797 aa11.24□□□□□ -0.61
CCM2-204ENST00000470837 SPDYE5A6NIY4 337 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 CXCL11O14625 94 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 CYTH3O43739 400 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 ZBED4O75132 1171 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 FLOT1O75955 427 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 MMP1P03956 469 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 FDX1P10109 184 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 VCAM1P19320 739 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 PTMSP20962 102 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 PABPC4Q13310 644 aaKnown RBP eCLIP11.23□□□□□ -0.61
CCM2-204ENST00000470837 PPIL2Q13356 520 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 PKN1Q16512 942 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 CDC37Q16543 378 aaPredicted RBP11.23□□□□□ -0.61
CCM2-204ENST00000470837 FOXD4L6Q3SYB3 417 aaPredicted RBP11.23□□□□□ -0.61
CCM2-204ENST00000470837 LDLRAD1Q5T700 205 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 OTUD7BQ6GQQ9 843 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 PPP1R18Q6NYC8 613 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 BTNL9Q6UXG8 535 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 FOXD4L3Q6VB84 417 aaPredicted RBP11.23□□□□□ -0.61
CCM2-204ENST00000470837 MOB2Q70IA6 237 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 FASTKD5Q7L8L6 764 aaKnown RBP11.23□□□□□ -0.61
CCM2-204ENST00000470837 PRPF38AQ8NAV1 312 aaKnown RBP11.23□□□□□ -0.61
CCM2-204ENST00000470837 GPKOWQ92917 476 aaPredicted RBP eCLIP11.23□□□□□ -0.61
CCM2-204ENST00000470837 OPTNQ96CV9 577 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 C12orf42Q96LP6 360 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 ZNF396Q96N95 335 aaPredicted RBP11.23□□□□□ -0.61
CCM2-204ENST00000470837 AIFM3Q96NN9 605 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 SLF1Q9BQI6 1058 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 AMNQ9BXJ7 453 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 GLT8D2Q9H1C3 349 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 RPAP3Q9H6T3 665 aaPredicted RBP11.23□□□□□ -0.61
CCM2-204ENST00000470837 JMJD4Q9H9V9 463 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 EMILIN3Q9NT22 766 aa11.23□□□□□ -0.61
CCM2-204ENST00000470837 USP17L15C9J2P7 530 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 USP17L13C9JLJ4 530 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 USP17L11C9JVI0 530 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 USP17L18D6R9N7 530 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 USP17L22D6RA61 530 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 USP17L17D6RBQ6 530 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 USP17L19D6RCP7 530 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 USP17L20D6RJB6 530 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 KRT85P78386 507 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 USP17L24Q0WX57 530 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 SNAPC2Q13487 334 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 WWC2Q6AWC2 1192 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 GADL1Q6ZQY3 521 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 FBXO11Q86XK2 927 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 DIS3L2Q8IYB7 885 aaKnown RBP11.22□□□□□ -0.61
CCM2-204ENST00000470837 CLMNQ96JQ2 1002 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 FOXP1Q9H334 677 aaPredicted RBP11.22□□□□□ -0.61
CCM2-204ENST00000470837 CFAP45Q9UL16 551 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 PRR12Q9ULL5 1215 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 NOL7Q9UMY1 257 aaKnown RBP11.22□□□□□ -0.61
CCM2-204ENST00000470837 KCNJ14Q9UNX9 436 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 ZDHHC9Q9Y397 364 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 PCDHA1Q9Y5I3 950 aa11.22□□□□□ -0.61
CCM2-204ENST00000470837 GREB1LQ9C091 1923 aaPredicted RBP11.21□□□□□ -0.61
CCM2-204ENST00000470837 SMCO2A6NFE2 343 aa11.21□□□□□ -0.61
CCM2-204ENST00000470837 DDX11L8A8MPP1 907 aa11.21□□□□□ -0.61
CCM2-204ENST00000470837 STXBP3O00186 592 aa11.21□□□□□ -0.61
CCM2-204ENST00000470837 IRF6O14896 467 aa11.21□□□□□ -0.61
CCM2-204ENST00000470837 ADCY7P51828 1080 aa11.21□□□□□ -0.61
CCM2-204ENST00000470837 MRPL12P52815 198 aaKnown RBP11.21□□□□□ -0.61
CCM2-204ENST00000470837 IRX3P78415 501 aaPredicted RBP11.21□□□□□ -0.61
CCM2-204ENST00000470837 KIF23Q02241 960 aaPredicted RBP11.21□□□□□ -0.61
CCM2-204ENST00000470837 QRICH1Q2TAL8 776 aa11.21□□□□□ -0.61
CCM2-204ENST00000470837 SH3D19Q5HYK7 790 aa11.21□□□□□ -0.61
CCM2-204ENST00000470837 KIAA1755Q5JYT7 1200 aa11.21□□□□□ -0.61
CCM2-204ENST00000470837 ATL3Q6DD88 541 aa11.21□□□□□ -0.61
CCM2-204ENST00000470837 PROCA1Q8NCQ7 364 aaPredicted RBP11.21□□□□□ -0.61
CCM2-204ENST00000470837 CUL5Q93034 780 aa11.21□□□□□ -0.61
CCM2-204ENST00000470837 PHF20Q9BVI0 1012 aa11.21□□□□□ -0.61
CCM2-204ENST00000470837 HOXC10Q9NYD6 342 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms