RNA–Protein interactions for RNA: ENST00000470240.5

SMC4-212, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-212ENST00000470240 SMARCE1Q969G3 411 aa9.13□□□□□ -0.95
SMC4-212ENST00000470240 FERMT2Q96AC1 680 aa9.13□□□□□ -0.95
SMC4-212ENST00000470240 C16orf45Q96MC5 204 aaPredicted RBP9.13□□□□□ -0.95
SMC4-212ENST00000470240 MAP3K14Q99558 947 aa9.13□□□□□ -0.95
SMC4-212ENST00000470240 ZKSCAN3Q9BRR0 538 aa9.13□□□□□ -0.95
SMC4-212ENST00000470240 IFNKQ9P0W0 207 aa9.13□□□□□ -0.95
SMC4-212ENST00000470240 MINPP1Q9UNW1 487 aa9.13□□□□□ -0.95
SMC4-212ENST00000470240 RTCBQ9Y3I0 505 aaKnown RBP9.13□□□□□ -0.95
SMC4-212ENST00000470240 CASZ1Q86V15 1759 aa9.13□□□□□ -0.95
SMC4-212ENST00000470240 COL24A1Q17RW2 1714 aa9.13□□□□□ -0.95
SMC4-212ENST00000470240 DLEC1Q9Y238 1755 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 BTBD18B2RXH4 712 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 PRPF3O43395 683 aaKnown RBP9.12□□□□□ -0.95
SMC4-212ENST00000470240 ORC4O43929 436 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 LILRB3O75022 631 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 WDHD1O75717 1129 aaPredicted RBP9.12□□□□□ -0.95
SMC4-212ENST00000470240 CALML3P27482 149 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 TXLNAP40222 546 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 POSTNQ15063 836 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 VPS72Q15906 364 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 CFAP100Q494V2 611 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 SH3D19Q5HYK7 790 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 TRAF7Q6Q0C0 670 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 SHC4Q6S5L8 630 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 BICDL1Q6ZP65 573 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 TMC6Q7Z403 805 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 STK11IPQ8N1F8 1099 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 MLKLQ8NB16 471 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 LINC00116Q8NCU8 138 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 KIF18AQ8NI77 898 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 SDR42E1Q8WUS8 393 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 NGLY1Q96IV0 654 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 ZNF287Q9HBT7 754 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 GJB4Q9NTQ9 266 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 EVA1BQ9NVM1 165 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 NRBP1Q9UHY1 535 aa9.12□□□□□ -0.95
SMC4-212ENST00000470240 IQSEC3Q9UPP2 1182 aaPredicted RBP9.12□□□□□ -0.95
SMC4-212ENST00000470240 CACNA1SQ13698 1873 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 TTC24A2A3L6 582 aaPredicted RBP9.11□□□□□ -0.95
SMC4-212ENST00000470240 TSPY2A6NKD2 308 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 WNT7AO00755 349 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 BAG3O95817 575 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 LDHCP07864 332 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 TOP1P11387 765 aaKnown RBP9.11□□□□□ -0.95
SMC4-212ENST00000470240 CDK11BP21127 795 aaKnown RBP9.11□□□□□ -0.95
SMC4-212ENST00000470240 GNAQP50148 359 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 WNT7BP56706 349 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 UBASH3AP57075 661 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 FANCCQ00597 558 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 KCNH2Q12809 1159 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 LRMPQ12912 555 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 SEC23AQ15436 765 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 SKIV2LQ15477 1246 aaKnown RBP9.11□□□□□ -0.95
SMC4-212ENST00000470240 PTCRAQ6ISU1 281 aaPredicted RBP9.11□□□□□ -0.95
SMC4-212ENST00000470240 LYPD8Q6UX82 237 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 FBXO33Q7Z6M2 555 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 NBPF11Q86T75 865 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 WDR66Q8TBY9 1149 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 RIOK1Q9BRS2 568 aaKnown RBP9.11□□□□□ -0.95
SMC4-212ENST00000470240 XPO4Q9C0E2 1151 aaKnown RBP9.11□□□□□ -0.95
SMC4-212ENST00000470240 UNC93B1Q9H1C4 597 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 SENP2Q9HC62 589 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 KCND1Q9NSA2 647 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 CCNL1Q9UK58 526 aaPredicted RBP9.11□□□□□ -0.95
SMC4-212ENST00000470240 KCNJ14Q9UNX9 436 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 SRPRBQ9Y5M8 271 aaKnown RBP9.11□□□□□ -0.95
SMC4-212ENST00000470240 LTBP4Q8N2S1 1624 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 MYH2Q9UKX2 1941 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 KIAA1551Q9HCM1 1747 aa9.11□□□□□ -0.95
SMC4-212ENST00000470240 NHSQ6T4R5 1651 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 GOLGA6L9A6NEM1 432 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 SNAP23O00161 211 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 LMOD1P29536 600 aaPredicted RBP9.1□□□□□ -0.95
SMC4-212ENST00000470240 USP5P45974 858 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 TRAPPC10P48553 1259 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 NLRP5P59047 1200 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 PNOCQ13519 176 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 CCDC144BQ3MJ40 725 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 SBK1Q52WX2 424 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 TBC1D9BQ66K14 1250 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 ZNF804AQ7Z570 1209 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 FAM177A1Q8N128 213 aaPredicted RBP9.1□□□□□ -0.95
SMC4-212ENST00000470240 PDCL2Q8N4E4 241 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 CCDC82Q8N4S0 544 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 ENAHQ8N8S7 591 aaPredicted RBP9.1□□□□□ -0.95
SMC4-212ENST00000470240 CCDC148Q8NFR7 591 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 ZNF592Q92610 1267 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 ERCC4Q92889 916 aaPredicted RBP9.1□□□□□ -0.95
SMC4-212ENST00000470240 FAM84BQ96KN1 310 aaPredicted RBP9.1□□□□□ -0.95
SMC4-212ENST00000470240 CLIC6Q96NY7 704 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 PHF20Q9BVI0 1012 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 KAT14Q9H8E8 782 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 CABP5Q9NP86 173 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 AATFQ9NY61 560 aaKnown RBP eCLIP9.1□□□□□ -0.954e-8■■■■■ 116
SMC4-212ENST00000470240 FBXO2Q9UK22 296 aaPredicted RBP9.1□□□□□ -0.95
SMC4-212ENST00000470240 LEMD3Q9Y2U8 911 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 BTAF1O14981 1849 aa9.1□□□□□ -0.95
SMC4-212ENST00000470240 BAZ2AQ9UIF9 1905 aaKnown RBP9.09□□□□□ -0.95
SMC4-212ENST00000470240 USP17L12C9JPN9 530 aa9.09□□□□□ -0.95
SMC4-212ENST00000470240 USP17L21D6R901 530 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms