RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 GMCL1P1Q8NEA9 526 aa20.82■□□□□ 0.92
COL7A1-208ENST00000470076 NEDD1Q8NHV4 660 aa20.82■□□□□ 0.92
COL7A1-208ENST00000470076 ZBTB47Q9UFB7 747 aaPredicted RBP20.82■□□□□ 0.92
COL7A1-208ENST00000470076 CTDP1Q9Y5B0 961 aaPredicted RBP20.82■□□□□ 0.92
COL7A1-208ENST00000470076 PLIN4Q96Q06 1357 aa20.82■□□□□ 0.92
COL7A1-208ENST00000470076 TSPY3P0CV98 308 aa20.81■□□□□ 0.92
COL7A1-208ENST00000470076 TSPY8P0CW00 308 aa20.81■□□□□ 0.92
COL7A1-208ENST00000470076 MSL3Q8N5Y2 521 aaKnown RBP20.81■□□□□ 0.92
COL7A1-208ENST00000470076 FEM1BQ9UK73 627 aa20.81■□□□□ 0.92
COL7A1-208ENST00000470076 ATP11BQ9Y2G3 1177 aa20.81■□□□□ 0.92
COL7A1-208ENST00000470076 SALL3Q9BXA9 1300 aa20.8■□□□□ 0.92
COL7A1-208ENST00000470076 ADCYAP1R1P41586 468 aa20.8■□□□□ 0.92
COL7A1-208ENST00000470076 PPARAQ07869 468 aa20.8■□□□□ 0.92
COL7A1-208ENST00000470076 SNX17Q15036 470 aa20.8■□□□□ 0.92
COL7A1-208ENST00000470076 KIFC2Q96AC6 838 aa20.8■□□□□ 0.92
COL7A1-208ENST00000470076 DDX11Q96FC9 970 aa20.8■□□□□ 0.92
COL7A1-208ENST00000470076 XPNPEP3Q9NQH7 507 aa20.8■□□□□ 0.92
COL7A1-208ENST00000470076 CNPY2Q9Y2B0 182 aa20.8■□□□□ 0.92
COL7A1-208ENST00000470076 COL6A3P12111 3177 aa20.8■□□□□ 0.92
COL7A1-208ENST00000470076 AKR1A1P14550 325 aa20.79■□□□□ 0.92
COL7A1-208ENST00000470076 C1orf53Q5VUE5 145 aa20.79■□□□□ 0.92
COL7A1-208ENST00000470076 RNF180Q86T96 592 aa20.79■□□□□ 0.92
COL7A1-208ENST00000470076 CPXCR1Q8N123 301 aa20.79■□□□□ 0.92
COL7A1-208ENST00000470076 LRRC47Q8N1G4 583 aaKnown RBP20.79■□□□□ 0.92
COL7A1-208ENST00000470076 SLC38A10Q9HBR0 1119 aa20.79■□□□□ 0.92
COL7A1-208ENST00000470076 RIPK3Q9Y572 518 aa20.79■□□□□ 0.92
COL7A1-208ENST00000470076 LAMA2P24043 3122 aaKnown RBP20.78■□□□□ 0.92
COL7A1-208ENST00000470076 DNAJC25-GNG10A0A024R161 153 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 ZNF865P0CJ78 1059 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-208ENST00000470076 FDX1P10109 184 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 BMP3P12645 472 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 TAL1P17542 331 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-208ENST00000470076 OAZ1P54368 228 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 TFAP4Q01664 338 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 PPP4R3BQ5MIZ7 849 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 ANKRD45Q5TZF3 282 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 SLFN13Q68D06 897 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.78■□□□□ 0.92
COL7A1-208ENST00000470076 FERMT2Q96AC1 680 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 FBXO40Q9UH90 709 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 PHF24Q9UPV7 400 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 LTBP2Q14767 1821 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 SYNGAP1Q96PV0 1343 aa20.78■□□□□ 0.92
COL7A1-208ENST00000470076 SLC4A3P48751 1232 aa20.77■□□□□ 0.92
COL7A1-208ENST00000470076 MAMDC4Q6UXC1 1216 aa20.77■□□□□ 0.92
COL7A1-208ENST00000470076 ZNF467Q7Z7K2 595 aaPredicted RBP20.77■□□□□ 0.92
COL7A1-208ENST00000470076 DEFB123Q8N688 67 aa20.77■□□□□ 0.92
COL7A1-208ENST00000470076 RAVER2Q9HCJ3 691 aaKnown RBP20.77■□□□□ 0.92
COL7A1-208ENST00000470076 TRIM60Q495X7 471 aa20.76■□□□□ 0.91
COL7A1-208ENST00000470076 CHST13Q8NET6 341 aa20.76■□□□□ 0.91
COL7A1-208ENST00000470076 EVI5LQ96CN4 794 aa20.76■□□□□ 0.91
COL7A1-208ENST00000470076 GMCL1Q96IK5 515 aa20.76■□□□□ 0.91
COL7A1-208ENST00000470076 CRBNQ96SW2 442 aa20.76■□□□□ 0.91
COL7A1-208ENST00000470076 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.76■□□□□ 0.91
COL7A1-208ENST00000470076 FOXP2O15409 715 aa20.75■□□□□ 0.91
COL7A1-208ENST00000470076 PGK1P00558 417 aa20.75■□□□□ 0.91
COL7A1-208ENST00000470076 STAT2P52630 851 aa20.75■□□□□ 0.91
COL7A1-208ENST00000470076 HDAC1Q13547 482 aaPredicted RBP20.75■□□□□ 0.91
COL7A1-208ENST00000470076 CCDC129Q6ZRS4 1044 aa20.75■□□□□ 0.91
COL7A1-208ENST00000470076 ANKRD35Q8N283 1001 aa20.75■□□□□ 0.91
COL7A1-208ENST00000470076 CHURC1Q8WUH1 139 aa20.75■□□□□ 0.91
COL7A1-208ENST00000470076 PRDM5Q9NQX1 630 aaPredicted RBP20.75■□□□□ 0.91
COL7A1-208ENST00000470076 FAM184BQ9ULE4 1060 aa20.75■□□□□ 0.91
COL7A1-208ENST00000470076 TSPY2A6NKD2 308 aa20.74■□□□□ 0.91
COL7A1-208ENST00000470076 TMEM232C9JQI7 657 aa20.74■□□□□ 0.91
COL7A1-208ENST00000470076 SNAI1O95863 264 aaPredicted RBP20.74■□□□□ 0.91
COL7A1-208ENST00000470076 FAM160B2Q86V87 743 aa20.74■□□□□ 0.91
COL7A1-208ENST00000470076 PDLIM7Q9NR12 457 aa20.74■□□□□ 0.91
COL7A1-208ENST00000470076 ISY1Q9ULR0 285 aaKnown RBP20.74■□□□□ 0.91
COL7A1-208ENST00000470076 STX8Q9UNK0 236 aa20.74■□□□□ 0.91
COL7A1-208ENST00000470076 ADAMTS4O75173 837 aa20.73■□□□□ 0.91
COL7A1-208ENST00000470076 SLC1A4P43007 532 aa20.73■□□□□ 0.91
COL7A1-208ENST00000470076 PDE1AP54750 535 aa20.73■□□□□ 0.91
COL7A1-208ENST00000470076 TLE2Q04725 743 aa20.73■□□□□ 0.91
COL7A1-208ENST00000470076 Q7L0L9 218 aa20.73■□□□□ 0.91
COL7A1-208ENST00000470076 TICAM2Q86XR7 235 aa20.73■□□□□ 0.91
COL7A1-208ENST00000470076 TSEN34Q9BSV6 310 aaKnown RBP20.73■□□□□ 0.91
COL7A1-208ENST00000470076 HELLSQ9NRZ9 838 aa20.73■□□□□ 0.91
COL7A1-208ENST00000470076 ANAPC4Q9UJX5 808 aa20.73■□□□□ 0.91
COL7A1-208ENST00000470076 ZHX1Q9UKY1 873 aaPredicted RBP20.73■□□□□ 0.91
COL7A1-208ENST00000470076 MCM3APO60318 1980 aa20.73■□□□□ 0.91
COL7A1-208ENST00000470076 A0A1W2PQ45 241 aaPredicted RBP20.72■□□□□ 0.91
COL7A1-208ENST00000470076 A0A1W2PQY0 241 aa20.72■□□□□ 0.91
COL7A1-208ENST00000470076 PLA2G6O60733 806 aa20.72■□□□□ 0.91
COL7A1-208ENST00000470076 CTDSPL2Q05D32 466 aa20.72■□□□□ 0.91
COL7A1-208ENST00000470076 IKQ13123 557 aaPredicted RBP20.72■□□□□ 0.91
COL7A1-208ENST00000470076 ALX1Q15699 326 aa20.72■□□□□ 0.91
COL7A1-208ENST00000470076 STAG1Q8WVM7 1258 aa20.72■□□□□ 0.91
COL7A1-208ENST00000470076 LENG1Q96BZ8 264 aaPredicted RBP20.72■□□□□ 0.91
COL7A1-208ENST00000470076 ABHD16BQ9H3Z7 469 aa20.72■□□□□ 0.91
COL7A1-208ENST00000470076 TACC3Q9Y6A5 838 aa20.72■□□□□ 0.91
COL7A1-208ENST00000470076 SYNRGQ9UMZ2 1314 aa20.72■□□□□ 0.91
COL7A1-208ENST00000470076 DUSP11O75319 330 aaKnown RBP20.71■□□□□ 0.91
COL7A1-208ENST00000470076 MCCP23508 829 aa20.71■□□□□ 0.91
COL7A1-208ENST00000470076 AAMPQ13685 434 aa20.71■□□□□ 0.91
COL7A1-208ENST00000470076 ACVR2BQ13705 512 aa20.71■□□□□ 0.91
COL7A1-208ENST00000470076 VPS53Q5VIR6 699 aa20.71■□□□□ 0.91
COL7A1-208ENST00000470076 BADQ92934 168 aa20.71■□□□□ 0.91
COL7A1-208ENST00000470076 ACAD9Q9H845 621 aa20.71■□□□□ 0.91
COL7A1-208ENST00000470076 IL17RBQ9NRM6 502 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms