RNA–Protein interactions for RNA: ENST00000469504.1

COL4A3-204, Transcript of collagen type IV alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL4A3, Length 521 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-204ENST00000469504 ZNF792Q3KQV3 632 aa13.05□□□□□ -0.32
COL4A3-204ENST00000469504 NEDD1Q8NHV4 660 aa13.05□□□□□ -0.32
COL4A3-204ENST00000469504 EVI5LQ96CN4 794 aa13.05□□□□□ -0.32
COL4A3-204ENST00000469504 CEP95Q96GE4 821 aa13.05□□□□□ -0.32
COL4A3-204ENST00000469504 UBE2OQ9C0C9 1292 aaKnown RBP13.05□□□□□ -0.32
COL4A3-204ENST00000469504 CLIP2Q9UDT6 1046 aa13.05□□□□□ -0.32
COL4A3-204ENST00000469504 SALL3Q9BXA9 1300 aa13.05□□□□□ -0.32
COL4A3-204ENST00000469504 RARBP10826 455 aa13.04□□□□□ -0.32
COL4A3-204ENST00000469504 AKR1A1P14550 325 aa13.04□□□□□ -0.32
COL4A3-204ENST00000469504 PPARAQ07869 468 aa13.04□□□□□ -0.32
COL4A3-204ENST00000469504 SNX17Q15036 470 aa13.04□□□□□ -0.32
COL4A3-204ENST00000469504 SNRNP48Q6IEG0 339 aaKnown RBP13.04□□□□□ -0.32
COL4A3-204ENST00000469504 ZNF467Q7Z7K2 595 aaPredicted RBP13.04□□□□□ -0.32
COL4A3-204ENST00000469504 RNF180Q86T96 592 aa13.04□□□□□ -0.32
COL4A3-204ENST00000469504 CHST13Q8NET6 341 aa13.04□□□□□ -0.32
COL4A3-204ENST00000469504 LBHD1Q9BQE6 289 aaPredicted RBP13.04□□□□□ -0.32
COL4A3-204ENST00000469504 CNPY2Q9Y2B0 182 aa13.04□□□□□ -0.32
COL4A3-204ENST00000469504 SYNGAP1Q96PV0 1343 aa13.04□□□□□ -0.32
COL4A3-204ENST00000469504 PARP14Q460N5 1801 aa13.04□□□□□ -0.32
COL4A3-204ENST00000469504 PLA2G6O60733 806 aa13.03□□□□□ -0.32
COL4A3-204ENST00000469504 GJC2Q5T442 439 aaPredicted RBP13.03□□□□□ -0.32
COL4A3-204ENST00000469504 MAMDC4Q6UXC1 1216 aa13.03□□□□□ -0.32
COL4A3-204ENST00000469504 SLC39A5Q6ZMH5 540 aa13.03□□□□□ -0.32
COL4A3-204ENST00000469504 FAM160B2Q86V87 743 aa13.03□□□□□ -0.32
COL4A3-204ENST00000469504 DDX11Q96FC9 970 aa13.03□□□□□ -0.32
COL4A3-204ENST00000469504 SLC38A10Q9HBR0 1119 aa13.03□□□□□ -0.32
COL4A3-204ENST00000469504 HELLSQ9NRZ9 838 aa13.03□□□□□ -0.32
COL4A3-204ENST00000469504 FRMPD3Q5JV73 1810 aa13.03□□□□□ -0.32
COL4A3-204ENST00000469504 PRDM1O75626 825 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 PGK2P07205 417 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 BMP3P12645 472 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 STAT2P52630 851 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 RTP1P59025 263 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 LRRC41Q15345 812 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 ANKRD45Q5TZF3 282 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 STK11IPQ8N1F8 1099 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 CHURC1Q8WUH1 139 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 GMCL1Q96IK5 515 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 SEC62Q99442 399 aaKnown RBP13.02□□□□□ -0.33
COL4A3-204ENST00000469504 TSEN34Q9BSV6 310 aaKnown RBP13.02□□□□□ -0.33
COL4A3-204ENST00000469504 XPNPEP3Q9NQH7 507 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 ANAPC4Q9UJX5 808 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 PHF24Q9UPV7 400 aa13.02□□□□□ -0.33
COL4A3-204ENST00000469504 DNAJC25-GNG10A0A024R161 153 aa13.01□□□□□ -0.33
COL4A3-204ENST00000469504 SOX1O00570 391 aaPredicted RBP13.01□□□□□ -0.33
COL4A3-204ENST00000469504 NT5C2P49902 561 aa13.01□□□□□ -0.33
COL4A3-204ENST00000469504 ATN1P54259 1190 aaPredicted RBP13.01□□□□□ -0.33
COL4A3-204ENST00000469504 TFAP4Q01664 338 aa13.01□□□□□ -0.33
COL4A3-204ENST00000469504 ALX1Q15699 326 aa13.01□□□□□ -0.33
COL4A3-204ENST00000469504 TKFCQ3LXA3 575 aa13.01□□□□□ -0.33
COL4A3-204ENST00000469504 FAM47AQ5JRC9 791 aa13.01□□□□□ -0.33
COL4A3-204ENST00000469504 PRAMEF19Q5SWL8 479 aa13.01□□□□□ -0.33
COL4A3-204ENST00000469504 SLFN13Q68D06 897 aa13.01□□□□□ -0.33
COL4A3-204ENST00000469504 OTUD7AQ8TE49 926 aaPredicted RBP13.01□□□□□ -0.33
COL4A3-204ENST00000469504 KIFC2Q96AC6 838 aa13.01□□□□□ -0.33
COL4A3-204ENST00000469504 NUP88Q99567 741 aaPredicted RBP13.01□□□□□ -0.33
COL4A3-204ENST00000469504 FAM184BQ9ULE4 1060 aa13.01□□□□□ -0.33
COL4A3-204ENST00000469504 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.01□□□□□ -0.33
COL4A3-204ENST00000469504 ZMYM6O95789 1325 aa13.01□□□□□ -0.33
COL4A3-204ENST00000469504 MOXD2PA6NHM9 499 aa13□□□□□ -0.33
COL4A3-204ENST00000469504 TSPY2A6NKD2 308 aa13□□□□□ -0.33
COL4A3-204ENST00000469504 ZNF865P0CJ78 1059 aaPredicted RBP13□□□□□ -0.33
COL4A3-204ENST00000469504 PCP11498 1178 aaKnown RBP13□□□□□ -0.33
COL4A3-204ENST00000469504 SLC1A4P43007 532 aa13□□□□□ -0.33
COL4A3-204ENST00000469504 PDE1AP54750 535 aa13□□□□□ -0.33
COL4A3-204ENST00000469504 LRRC47Q8N1G4 583 aaKnown RBP13□□□□□ -0.33
COL4A3-204ENST00000469504 ANKRD35Q8N283 1001 aa13□□□□□ -0.33
COL4A3-204ENST00000469504 STAG1Q8WVM7 1258 aa13□□□□□ -0.33
COL4A3-204ENST00000469504 LRCH3Q96II8 777 aa13□□□□□ -0.33
COL4A3-204ENST00000469504 ABHD16BQ9H3Z7 469 aa13□□□□□ -0.33
COL4A3-204ENST00000469504 ATP11BQ9Y2G3 1177 aa13□□□□□ -0.33
COL4A3-204ENST00000469504 ORC4O43929 436 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 FGRP09769 529 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 ADCYAP1R1P41586 468 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 NOVP48745 357 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 MFAP1P55081 439 aaKnown RBP12.99□□□□□ -0.33
COL4A3-204ENST00000469504 MDM2Q00987 491 aaPredicted RBP12.99□□□□□ -0.33
COL4A3-204ENST00000469504 MCMDC2Q4G0Z9 681 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 ANO1Q5XXA6 986 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 RCSD1Q6JBY9 416 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 CPXCR1Q8N123 301 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 NUP133Q8WUM0 1156 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 CRBNQ96SW2 442 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 ACAD9Q9H845 621 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 SPC25Q9HBM1 224 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 RAVER2Q9HCJ3 691 aaKnown RBP12.99□□□□□ -0.33
COL4A3-204ENST00000469504 STX8Q9UNK0 236 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 RIPK3Q9Y572 518 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 TACC3Q9Y6A5 838 aa12.99□□□□□ -0.33
COL4A3-204ENST00000469504 COL11A1P12107 1806 aaPredicted RBP12.99□□□□□ -0.33
COL4A3-204ENST00000469504 TMEM232C9JQI7 657 aa12.98□□□□□ -0.33
COL4A3-204ENST00000469504 ADAMTS4O75173 837 aa12.98□□□□□ -0.33
COL4A3-204ENST00000469504 DUSP11O75319 330 aaKnown RBP12.98□□□□□ -0.33
COL4A3-204ENST00000469504 CST5P28325 142 aaPredicted RBP12.98□□□□□ -0.33
COL4A3-204ENST00000469504 IKQ13123 557 aaPredicted RBP12.98□□□□□ -0.33
COL4A3-204ENST00000469504 FAM109BQ6ICB4 259 aaPredicted RBP12.98□□□□□ -0.33
COL4A3-204ENST00000469504 TOX2Q96NM4 488 aa12.98□□□□□ -0.33
COL4A3-204ENST00000469504 RWDD1Q9H446 243 aaPredicted RBP12.98□□□□□ -0.33
COL4A3-204ENST00000469504 TCP11L1Q9NUJ3 509 aa12.98□□□□□ -0.33
COL4A3-204ENST00000469504 PNMA2Q9UL42 364 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms