RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 RNF186Q9NXI6 227 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 SEC63Q9UGP8 760 aaKnown RBP9.44□□□□□ -0.9
HDAC6-216ENST00000468949 BRPF3Q9ULD4 1205 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 KIF3AQ9Y496 699 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 AFG3L2Q9Y4W6 797 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.44□□□□□ -0.9
HDAC6-216ENST00000468949 A0A0G2JLL6 359 aaPredicted RBP9.43□□□□□ -0.9
HDAC6-216ENST00000468949 A0A1W2PRG0 241 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 STK25O00506 426 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 PFKFB2O60825 505 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 FLOT1O75955 427 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 VCAM1P19320 739 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 TM4SF4P48230 202 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 NOVP48745 357 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 INHBEP58166 350 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 ME3Q16798 604 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 FAM83BQ5T0W9 1011 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 KCTD1Q719H9 257 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 PRRT2Q7Z6L0 340 aaPredicted RBP9.43□□□□□ -0.9
HDAC6-216ENST00000468949 FAM160B2Q86V87 743 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 FANCBQ8NB91 859 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 PROCA1Q8NCQ7 364 aaPredicted RBP9.43□□□□□ -0.9
HDAC6-216ENST00000468949 CHURC1Q8WUH1 139 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 TMX3Q96JJ7 454 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 CFHR5Q9BXR6 569 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 RPAP3Q9H6T3 665 aaPredicted RBP9.43□□□□□ -0.9
HDAC6-216ENST00000468949 RBM27Q9P2N5 1060 aaKnown RBP9.43□□□□□ -0.9
HDAC6-216ENST00000468949 PNMA3Q9UL41 463 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 MYH4Q9Y623 1939 aa9.43□□□□□ -0.9
HDAC6-216ENST00000468949 NID2Q14112 1375 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.42□□□□□ -0.9
HDAC6-216ENST00000468949 CCL15-CCL14A0A0B4J2E2 113 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 TMEM232C9JQI7 657 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 KLRF2D3W0D1 207 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 CD2BP2O95400 341 aaKnown RBP9.42□□□□□ -0.9
HDAC6-216ENST00000468949 GOLGA8HP0CJ92 632 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 OSBPP22059 807 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 GJA5P36382 358 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 EVCP57679 992 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 HMGN5P82970 282 aaKnown RBP9.42□□□□□ -0.9
HDAC6-216ENST00000468949 ZNF543Q08ER8 600 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 SCRN1Q12765 414 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 TROAPQ12815 778 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 CCL15Q16663 113 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 NOM1Q5C9Z4 860 aaKnown RBP9.42□□□□□ -0.9
HDAC6-216ENST00000468949 OTUD7BQ6GQQ9 843 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 NECAB1Q8N987 351 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 FAM184AQ8NB25 1140 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 RRP36Q96EU6 259 aaKnown RBP9.42□□□□□ -0.9
HDAC6-216ENST00000468949 ZFP91Q96JP5 570 aaPredicted RBP9.42□□□□□ -0.9
HDAC6-216ENST00000468949 C12orf42Q96LP6 360 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 NUP88Q99567 741 aaPredicted RBP9.42□□□□□ -0.9
HDAC6-216ENST00000468949 NCOA5Q9HCD5 579 aaKnown RBP9.42□□□□□ -0.9
HDAC6-216ENST00000468949 FEM1BQ9UK73 627 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 KCNH4Q9UQ05 1017 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 SMC3Q9UQE7 1217 aa9.42□□□□□ -0.9
HDAC6-216ENST00000468949 PTPDC1A2A3K4 754 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 USP17L15C9J2P7 530 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 USP17L13C9JLJ4 530 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 USP17L11C9JVI0 530 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 USP17L18D6R9N7 530 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 USP17L22D6RA61 530 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 USP17L17D6RBQ6 530 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 USP17L19D6RCP7 530 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 USP17L20D6RJB6 530 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 IGF2BP3O00425 579 aaKnown RBP eCLIP9.41□□□□□ -0.9
HDAC6-216ENST00000468949 LARGE1O95461 756 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 SNHG28P0DPA3 235 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 XBP1P17861 261 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 SSRP1Q08945 709 aaKnown RBP9.41□□□□□ -0.9
HDAC6-216ENST00000468949 USP17L24Q0WX57 530 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 SH3D19Q5HYK7 790 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 SYDE2Q5VT97 1194 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 TMTC3Q6ZXV5 915 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 RASGRP2Q7LDG7 609 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 HOMER1Q86YM7 354 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 IFNL1Q8IU54 200 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 SIAH1Q8IUQ4 282 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 CCDC82Q8N4S0 544 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 SMCR8Q8TEV9 937 aaPredicted RBP9.41□□□□□ -0.9
HDAC6-216ENST00000468949 PIBF1Q8WXW3 757 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 WASF1Q92558 559 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 KIFC2Q96AC6 838 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 SLF1Q9BQI6 1058 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 LLPHQ9BRT6 129 aaKnown RBP9.41□□□□□ -0.9
HDAC6-216ENST00000468949 SLC26A6Q9BXS9 759 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 EMILIN3Q9NT22 766 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 MAD2L2Q9UI95 211 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 AGTPBP1Q9UPW5 1226 aa9.41□□□□□ -0.9
HDAC6-216ENST00000468949 LOC285556D6RIA3 1793 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 ZBED4O75132 1171 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 PLEKHA8P1O95397 391 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 CDC27P30260 824 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 ADD1P35611 737 aaKnown RBP9.4□□□□□ -0.9
HDAC6-216ENST00000468949 SLC16A2P36021 539 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 TRAF1Q13077 416 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 DGKZQ13574 1117 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 TRIM29Q14134 588 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 STAG2Q8N3U4 1231 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 SPRYD3Q8NCJ5 442 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms