RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 BMP3P12645 472 aa22.6■■□□□ 1.21
COL7A1-207ENST00000467985 CYBAP13498 195 aa22.6■■□□□ 1.21
COL7A1-207ENST00000467985 SDSP20132 328 aa22.6■■□□□ 1.21
COL7A1-207ENST00000467985 GMCL1Q96IK5 515 aa22.6■■□□□ 1.21
COL7A1-207ENST00000467985 MAML3Q96JK9 1138 aa22.6■■□□□ 1.21
COL7A1-207ENST00000467985 STX8Q9UNK0 236 aa22.6■■□□□ 1.21
COL7A1-207ENST00000467985 COLQQ9Y215 455 aaPredicted RBP22.6■■□□□ 1.21
COL7A1-207ENST00000467985 DIS3Q9Y2L1 958 aaKnown RBP22.6■■□□□ 1.21
COL7A1-207ENST00000467985 HIP1O00291 1037 aa22.59■■□□□ 1.21
COL7A1-207ENST00000467985 RANBP6O60518 1105 aaKnown RBP22.59■■□□□ 1.21
COL7A1-207ENST00000467985 FGRP09769 529 aa22.59■■□□□ 1.21
COL7A1-207ENST00000467985 SNRNP48Q6IEG0 339 aaKnown RBP22.59■■□□□ 1.21
COL7A1-207ENST00000467985 KIFC2Q96AC6 838 aa22.59■■□□□ 1.21
COL7A1-207ENST00000467985 ZNFX1Q9P2E3 1918 aaKnown RBP22.59■■□□□ 1.21
COL7A1-207ENST00000467985 PCP11498 1178 aaKnown RBP22.58■■□□□ 1.21
COL7A1-207ENST00000467985 OAZ1P54368 228 aa22.58■■□□□ 1.21
COL7A1-207ENST00000467985 ZNF589Q86UQ0 364 aaPredicted RBP22.58■■□□□ 1.21
COL7A1-207ENST00000467985 CHURC1Q8WUH1 139 aa22.58■■□□□ 1.21
COL7A1-207ENST00000467985 SLC38A10Q9HBR0 1119 aa22.58■■□□□ 1.21
COL7A1-207ENST00000467985 NRBP1Q9UHY1 535 aa22.58■■□□□ 1.21
COL7A1-207ENST00000467985 TRIOBPQ9H2D6 2365 aa22.58■■□□□ 1.21
COL7A1-207ENST00000467985 FRMPD3Q5JV73 1810 aa22.57■■□□□ 1.2
COL7A1-207ENST00000467985 COL6A1P12109 1028 aa22.57■■□□□ 1.2
COL7A1-207ENST00000467985 SLC1A4P43007 532 aa22.57■■□□□ 1.2
COL7A1-207ENST00000467985 STAT2P52630 851 aa22.57■■□□□ 1.2
COL7A1-207ENST00000467985 FAM160B2Q86V87 743 aa22.57■■□□□ 1.2
COL7A1-207ENST00000467985 TRPV1Q8NER1 839 aa22.57■■□□□ 1.2
COL7A1-207ENST00000467985 INCENPQ9NQS7 918 aa22.57■■□□□ 1.2
COL7A1-207ENST00000467985 IL17RBQ9NRM6 502 aa22.57■■□□□ 1.2
COL7A1-207ENST00000467985 DIAPH3Q9NSV4 1193 aa22.57■■□□□ 1.2
COL7A1-207ENST00000467985 TMEM232C9JQI7 657 aa22.56■■□□□ 1.2
COL7A1-207ENST00000467985 SEPT4O43236 478 aa22.56■■□□□ 1.2
COL7A1-207ENST00000467985 PLA2G6O60733 806 aa22.56■■□□□ 1.2
COL7A1-207ENST00000467985 ZNF792Q3KQV3 632 aa22.56■■□□□ 1.2
COL7A1-207ENST00000467985 CHRDL2Q6WN34 429 aa22.56■■□□□ 1.2
COL7A1-207ENST00000467985 TOMM22Q9NS69 142 aa22.56■■□□□ 1.2
COL7A1-207ENST00000467985 FBXO40Q9UH90 709 aa22.56■■□□□ 1.2
COL7A1-207ENST00000467985 ISY1Q9ULR0 285 aaKnown RBP22.56■■□□□ 1.2
COL7A1-207ENST00000467985 ALPK3Q96L96 1907 aa22.55■■□□□ 1.2
COL7A1-207ENST00000467985 PGK2P07205 417 aa22.55■■□□□ 1.2
COL7A1-207ENST00000467985 NOVP48745 357 aa22.55■■□□□ 1.2
COL7A1-207ENST00000467985 IKQ13123 557 aaPredicted RBP22.55■■□□□ 1.2
COL7A1-207ENST00000467985 CPXCR1Q8N123 301 aa22.55■■□□□ 1.2
COL7A1-207ENST00000467985 ARRDC4Q8NCT1 418 aa22.55■■□□□ 1.2
COL7A1-207ENST00000467985 STAG1Q8WVM7 1258 aa22.55■■□□□ 1.2
COL7A1-207ENST00000467985 TINF2Q9BSI4 451 aa22.55■■□□□ 1.2
COL7A1-207ENST00000467985 PFASO15067 1338 aa22.55■■□□□ 1.2
COL7A1-207ENST00000467985 PLXNA1Q9UIW2 1896 aa22.54■■□□□ 1.2
COL7A1-207ENST00000467985 NMT2O60551 498 aa22.54■■□□□ 1.2
COL7A1-207ENST00000467985 MCCP23508 829 aa22.54■■□□□ 1.2
COL7A1-207ENST00000467985 NT5C2P49902 561 aa22.54■■□□□ 1.2
COL7A1-207ENST00000467985 RCSD1Q6JBY9 416 aa22.54■■□□□ 1.2
COL7A1-207ENST00000467985 MFSD6Q6ZSS7 791 aa22.54■■□□□ 1.2
COL7A1-207ENST00000467985 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.54■■□□□ 1.2
COL7A1-207ENST00000467985 MSL3Q8N5Y2 521 aaKnown RBP22.54■■□□□ 1.2
COL7A1-207ENST00000467985 CHST13Q8NET6 341 aa22.54■■□□□ 1.2
COL7A1-207ENST00000467985 DDX11Q96FC9 970 aa22.54■■□□□ 1.2
COL7A1-207ENST00000467985 RNF41Q9H4P4 317 aaPredicted RBP22.54■■□□□ 1.2
COL7A1-207ENST00000467985 TCP11L1Q9NUJ3 509 aa22.54■■□□□ 1.2
COL7A1-207ENST00000467985 TACC3Q9Y6A5 838 aa22.54■■□□□ 1.2
COL7A1-207ENST00000467985 DNM1LO00429 736 aa22.53■■□□□ 1.2
COL7A1-207ENST00000467985 RRP12Q5JTH9 1297 aaKnown RBP22.53■■□□□ 1.2
COL7A1-207ENST00000467985 AKNAD1Q5T1N1 836 aa22.53■■□□□ 1.2
COL7A1-207ENST00000467985 CWC27Q6UX04 472 aaKnown RBP22.53■■□□□ 1.2
COL7A1-207ENST00000467985 C7orf61Q8IZ16 206 aa22.53■■□□□ 1.2
COL7A1-207ENST00000467985 RAVER2Q9HCJ3 691 aaKnown RBP22.53■■□□□ 1.2
COL7A1-207ENST00000467985 RIPK3Q9Y572 518 aa22.53■■□□□ 1.2
COL7A1-207ENST00000467985 SLC4A3P48751 1232 aa22.52■■□□□ 1.2
COL7A1-207ENST00000467985 DCAF4Q8WV16 495 aa22.52■■□□□ 1.2
COL7A1-207ENST00000467985 DNAJC25-GNG10A0A024R161 153 aa22.51■■□□□ 1.19
COL7A1-207ENST00000467985 ZNF213O14771 459 aa22.51■■□□□ 1.19
COL7A1-207ENST00000467985 TOP1P11387 765 aaKnown RBP22.51■■□□□ 1.19
COL7A1-207ENST00000467985 HAND2P61296 217 aa22.51■■□□□ 1.19
COL7A1-207ENST00000467985 PRAMEF19Q5SWL8 479 aa22.51■■□□□ 1.19
COL7A1-207ENST00000467985 ANKRD35Q8N283 1001 aa22.51■■□□□ 1.19
COL7A1-207ENST00000467985 CNPY2Q9Y2B0 182 aa22.51■■□□□ 1.19
COL7A1-207ENST00000467985 TKFCQ3LXA3 575 aa22.5■■□□□ 1.19
COL7A1-207ENST00000467985 KCTD1Q719H9 257 aa22.5■■□□□ 1.19
COL7A1-207ENST00000467985 ZNF467Q7Z7K2 595 aaPredicted RBP22.5■■□□□ 1.19
COL7A1-207ENST00000467985 ESR2Q92731 530 aa22.5■■□□□ 1.19
COL7A1-207ENST00000467985 TTC14Q96N46 770 aa22.5■■□□□ 1.19
COL7A1-207ENST00000467985 SENP6Q9GZR1 1112 aaPredicted RBP22.5■■□□□ 1.19
COL7A1-207ENST00000467985 PRO3102Q9H379 93 aa22.5■■□□□ 1.19
COL7A1-207ENST00000467985 RBM27Q9P2N5 1060 aaKnown RBP22.5■■□□□ 1.19
COL7A1-207ENST00000467985 SYNGAP1Q96PV0 1343 aa22.5■■□□□ 1.19
COL7A1-207ENST00000467985 A0A1W2PPC1 479 aa22.49■■□□□ 1.19
COL7A1-207ENST00000467985 KBTBD13C9JR72 458 aa22.49■■□□□ 1.19
COL7A1-207ENST00000467985 MAMDC4Q6UXC1 1216 aa22.49■■□□□ 1.19
COL7A1-207ENST00000467985 DSCC1Q9BVC3 393 aa22.49■■□□□ 1.19
COL7A1-207ENST00000467985 NEFLP07196 543 aa22.48■■□□□ 1.19
COL7A1-207ENST00000467985 RARBP10826 455 aa22.48■■□□□ 1.19
COL7A1-207ENST00000467985 FXR1P51114 621 aaKnown RBP eCLIP22.48■■□□□ 1.19
COL7A1-207ENST00000467985 LRRC26Q2I0M4 334 aa22.48■■□□□ 1.19
COL7A1-207ENST00000467985 CCDC96Q2M329 555 aa22.48■■□□□ 1.19
COL7A1-207ENST00000467985 TBC1D10CQ8IV04 446 aa22.48■■□□□ 1.19
COL7A1-207ENST00000467985 TMEM47Q9BQJ4 181 aa22.48■■□□□ 1.19
COL7A1-207ENST00000467985 ACAD9Q9H845 621 aa22.48■■□□□ 1.19
COL7A1-207ENST00000467985 CTNNA3Q9UI47 895 aa22.48■■□□□ 1.19
COL7A1-207ENST00000467985 PRR12Q9ULL5 1215 aa22.48■■□□□ 1.19
COL7A1-207ENST00000467985 LAMA4Q16363 1823 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms