RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 TRIM43Q96BQ3 446 aaPredicted RBP24.63■■□□□ 1.53
COL6A1-203ENST00000466285 CHMP4CQ96CF2 233 aa24.63■■□□□ 1.53
COL6A1-203ENST00000466285 XPNPEP3Q9NQH7 507 aa24.63■■□□□ 1.53
COL6A1-203ENST00000466285 CLIP2Q9UDT6 1046 aa24.63■■□□□ 1.53
COL6A1-203ENST00000466285 TACC3Q9Y6A5 838 aa24.63■■□□□ 1.53
COL6A1-203ENST00000466285 SALL3Q9BXA9 1300 aa24.62■■□□□ 1.53
COL6A1-203ENST00000466285 CCDC129Q6ZRS4 1044 aa24.62■■□□□ 1.53
COL6A1-203ENST00000466285 IFNL3Q8IZI9 196 aa24.62■■□□□ 1.53
COL6A1-203ENST00000466285 SLC17A8Q8NDX2 589 aa24.62■■□□□ 1.53
COL6A1-203ENST00000466285 RAVER2Q9HCJ3 691 aaKnown RBP24.62■■□□□ 1.53
COL6A1-203ENST00000466285 SLC5A4Q9NY91 659 aa24.62■■□□□ 1.53
COL6A1-203ENST00000466285 PHF24Q9UPV7 400 aa24.62■■□□□ 1.53
COL6A1-203ENST00000466285 PLIN4Q96Q06 1357 aa24.62■■□□□ 1.53
COL6A1-203ENST00000466285 MYADML2A6NDP7 307 aa24.61■■□□□ 1.53
COL6A1-203ENST00000466285 SLC4A3P48751 1232 aa24.61■■□□□ 1.53
COL6A1-203ENST00000466285 BADQ92934 168 aa24.61■■□□□ 1.53
COL6A1-203ENST00000466285 GPATCH3Q96I76 525 aa24.61■■□□□ 1.53
COL6A1-203ENST00000466285 GUCD1Q96NT3 240 aa24.61■■□□□ 1.53
COL6A1-203ENST00000466285 LBHD1Q9BQE6 289 aaPredicted RBP24.61■■□□□ 1.53
COL6A1-203ENST00000466285 TEX13BQ9BXU2 312 aa24.61■■□□□ 1.53
COL6A1-203ENST00000466285 DNAJC25-GNG10A0A024R161 153 aa24.6■■□□□ 1.53
COL6A1-203ENST00000466285 ADAMTS4O75173 837 aa24.6■■□□□ 1.53
COL6A1-203ENST00000466285 SNAI1O95863 264 aaPredicted RBP24.6■■□□□ 1.53
COL6A1-203ENST00000466285 APPP05067 770 aa24.6■■□□□ 1.53
COL6A1-203ENST00000466285 SHHQ15465 462 aa24.6■■□□□ 1.53
COL6A1-203ENST00000466285 CPXCR1Q8N123 301 aa24.6■■□□□ 1.53
COL6A1-203ENST00000466285 KIFC2Q96AC6 838 aa24.6■■□□□ 1.53
COL6A1-203ENST00000466285 FAM161BQ96MY7 647 aa24.6■■□□□ 1.53
COL6A1-203ENST00000466285 INCENPQ9NQS7 918 aa24.6■■□□□ 1.53
COL6A1-203ENST00000466285 MTMR4Q9NYA4 1195 aa24.6■■□□□ 1.53
COL6A1-203ENST00000466285 SYNRGQ9UMZ2 1314 aa24.6■■□□□ 1.53
COL6A1-203ENST00000466285 RARBP10826 455 aa24.59■■□□□ 1.53
COL6A1-203ENST00000466285 TLE2Q04725 743 aa24.59■■□□□ 1.53
COL6A1-203ENST00000466285 ZMYM1Q5SVZ6 1142 aa24.59■■□□□ 1.53
COL6A1-203ENST00000466285 DDX49Q9Y6V7 483 aaKnown RBP24.59■■□□□ 1.53
COL6A1-203ENST00000466285 A0A1W2PQ45 241 aaPredicted RBP24.58■■□□□ 1.53
COL6A1-203ENST00000466285 A0A1W2PQY0 241 aa24.58■■□□□ 1.53
COL6A1-203ENST00000466285 ZFYP08048 801 aaPredicted RBP24.58■■□□□ 1.53
COL6A1-203ENST00000466285 EPHB4P54760 987 aa24.58■■□□□ 1.53
COL6A1-203ENST00000466285 FSD1Q9BTV5 496 aa24.58■■□□□ 1.53
COL6A1-203ENST00000466285 NRBP1Q9UHY1 535 aa24.58■■□□□ 1.53
COL6A1-203ENST00000466285 DIS3Q9Y2L1 958 aaKnown RBP24.58■■□□□ 1.53
COL6A1-203ENST00000466285 TTC41PQ6P2S7 1318 aa24.58■■□□□ 1.52
COL6A1-203ENST00000466285 PATL2C9JE40 543 aaKnown RBP24.57■■□□□ 1.52
COL6A1-203ENST00000466285 SLC38A10Q9HBR0 1119 aa24.57■■□□□ 1.52
COL6A1-203ENST00000466285 STXBP5LQ9Y2K9 1186 aa24.57■■□□□ 1.52
COL6A1-203ENST00000466285 POTEB2H3BUK9 544 aa24.56■■□□□ 1.52
COL6A1-203ENST00000466285 NMT2O60551 498 aa24.56■■□□□ 1.52
COL6A1-203ENST00000466285 GNAT2P19087 354 aa24.56■■□□□ 1.52
COL6A1-203ENST00000466285 PTGS1P23219 599 aa24.56■■□□□ 1.52
COL6A1-203ENST00000466285 PPARAQ07869 468 aa24.56■■□□□ 1.52
COL6A1-203ENST00000466285 PRPF38AQ8NAV1 312 aaKnown RBP24.56■■□□□ 1.52
COL6A1-203ENST00000466285 MKL1Q969V6 931 aa24.56■■□□□ 1.52
COL6A1-203ENST00000466285 PRKAG2Q9UGJ0 569 aa24.56■■□□□ 1.52
COL6A1-203ENST00000466285 ZHX1Q9UKY1 873 aaPredicted RBP24.56■■□□□ 1.52
COL6A1-203ENST00000466285 ATP2A1O14983 1001 aa24.55■■□□□ 1.52
COL6A1-203ENST00000466285 AKR1A1P14550 325 aa24.55■■□□□ 1.52
COL6A1-203ENST00000466285 CTDSPL2Q05D32 466 aa24.55■■□□□ 1.52
COL6A1-203ENST00000466285 VPS53Q5VIR6 699 aa24.55■■□□□ 1.52
COL6A1-203ENST00000466285 C1orf53Q5VUE5 145 aa24.55■■□□□ 1.52
COL6A1-203ENST00000466285 ZNF444Q8N0Y2 327 aaPredicted RBP24.55■■□□□ 1.52
COL6A1-203ENST00000466285 NEDD1Q8NHV4 660 aa24.55■■□□□ 1.52
COL6A1-203ENST00000466285 HOMER2Q9NSB8 354 aa24.55■■□□□ 1.52
COL6A1-203ENST00000466285 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.55■■□□□ 1.52
COL6A1-203ENST00000466285 ZNF536O15090 1300 aa24.55■■□□□ 1.52
COL6A1-203ENST00000466285 CUL9Q8IWT3 2517 aa24.55■■□□□ 1.52
COL6A1-203ENST00000466285 PQBP1O60828 265 aaKnown RBP24.54■■□□□ 1.52
COL6A1-203ENST00000466285 TTLL1O95922 423 aa24.54■■□□□ 1.52
COL6A1-203ENST00000466285 MX1P20591 662 aa24.54■■□□□ 1.52
COL6A1-203ENST00000466285 COPB2P35606 906 aa24.54■■□□□ 1.52
COL6A1-203ENST00000466285 SNAP25P60880 206 aa24.54■■□□□ 1.52
COL6A1-203ENST00000466285 SLFN13Q68D06 897 aa24.54■■□□□ 1.52
COL6A1-203ENST00000466285 CCSAPQ6IQ19 270 aaPredicted RBP24.54■■□□□ 1.52
COL6A1-203ENST00000466285 GMCL1P1Q8NEA9 526 aa24.54■■□□□ 1.52
COL6A1-203ENST00000466285 ASTN1O14525 1302 aa24.54■■□□□ 1.52
COL6A1-203ENST00000466285 SYNGAP1Q96PV0 1343 aa24.54■■□□□ 1.52
COL6A1-203ENST00000466285 PRUNE2Q8WUY3 3088 aa24.53■■□□□ 1.52
COL6A1-203ENST00000466285 DLL1O00548 723 aa24.53■■□□□ 1.52
COL6A1-203ENST00000466285 TFAP4Q01664 338 aa24.53■■□□□ 1.52
COL6A1-203ENST00000466285 CNTN2Q02246 1040 aa24.53■■□□□ 1.52
COL6A1-203ENST00000466285 MAMDC4Q6UXC1 1216 aa24.53■■□□□ 1.52
COL6A1-203ENST00000466285 KATNBL1Q9H079 304 aa24.53■■□□□ 1.52
COL6A1-203ENST00000466285 NAPBQ9H115 298 aa24.53■■□□□ 1.52
COL6A1-203ENST00000466285 CNPY2Q9Y2B0 182 aa24.53■■□□□ 1.52
COL6A1-203ENST00000466285 ZBED4O75132 1171 aa24.52■■□□□ 1.52
COL6A1-203ENST00000466285 CLTBP09497 229 aa24.52■■□□□ 1.52
COL6A1-203ENST00000466285 TSPY3P0CV98 308 aa24.52■■□□□ 1.52
COL6A1-203ENST00000466285 TSPY8P0CW00 308 aa24.52■■□□□ 1.52
COL6A1-203ENST00000466285 RRP1P56182 461 aaKnown RBP24.52■■□□□ 1.52
COL6A1-203ENST00000466285 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.52■■□□□ 1.52
COL6A1-203ENST00000466285 RNF180Q86T96 592 aa24.52■■□□□ 1.52
COL6A1-203ENST00000466285 KLHDC9Q8NEP7 349 aa24.52■■□□□ 1.52
COL6A1-203ENST00000466285 DDX11Q96FC9 970 aa24.52■■□□□ 1.52
COL6A1-203ENST00000466285 CRBNQ96SW2 442 aa24.52■■□□□ 1.52
COL6A1-203ENST00000466285 IL17RBQ9NRM6 502 aa24.52■■□□□ 1.52
COL6A1-203ENST00000466285 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.52■■□□□ 1.52
COL6A1-203ENST00000466285 FEM1BQ9UK73 627 aa24.52■■□□□ 1.52
COL6A1-203ENST00000466285 TMEM232C9JQI7 657 aa24.51■■□□□ 1.51
COL6A1-203ENST00000466285 BMP3P12645 472 aa24.51■■□□□ 1.51
COL6A1-203ENST00000466285 ACLYP53396 1101 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms