RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 HERVK_113P62684 666 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 C1QBPQ07021 282 aaKnown RBP9.03□□□□□ -0.96
USP4-207ENST00000462673 MOGSQ13724 837 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 FAM110CQ1W6H9 321 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 ASPRV1Q53RT3 343 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 TREML2Q5T2D2 321 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 C17orf99Q6UX52 265 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 LBX2Q6XYB7 198 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 SPICE1Q8N0Z3 855 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 PNMA1Q8ND90 353 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 CTCFLQ8NI51 663 aaPredicted RBP9.03□□□□□ -0.96
USP4-207ENST00000462673 KCNB2Q92953 911 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 COA7Q96BR5 231 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 P2RX7Q99572 595 aaKnown RBP9.03□□□□□ -0.96
USP4-207ENST00000462673 SLF1Q9BQI6 1058 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 LZTS2Q9BRK4 669 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 ZKSCAN3Q9BRR0 538 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 NBPF3Q9H094 633 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 SLC5A4Q9NY91 659 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.03□□□□□ -0.96
USP4-207ENST00000462673 SLC12A7Q9Y666 1083 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 MYH8P13535 1937 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 NEDD4P46934 1319 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 DDX60LQ5H9U9 1706 aaKnown RBP9.02□□□□□ -0.96
USP4-207ENST00000462673 LAMB1P07942 1786 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 TMEM232C9JQI7 657 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 STRNO43815 780 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 NMT2O60551 498 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 FMNL1O95466 1100 aaPredicted RBP9.02□□□□□ -0.97
USP4-207ENST00000462673 CYP2C8P10632 490 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 MAPK4P31152 587 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 DSG3P32926 999 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 LBX1P52954 281 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 OAZ1P54368 228 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 CCDC96Q2M329 555 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 FAM83BQ5T0W9 1011 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 RUFY3Q7L099 469 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 LRRC47Q8N1G4 583 aaKnown RBP9.02□□□□□ -0.97
USP4-207ENST00000462673 FBXL16Q8N461 479 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 ANKRD13CQ8N6S4 541 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 ENAHQ8N8S7 591 aaPredicted RBP9.02□□□□□ -0.97
USP4-207ENST00000462673 IGDCC4Q8TDY8 1250 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 JAKMIP1Q96N16 626 aaKnown RBP9.02□□□□□ -0.97
USP4-207ENST00000462673 MROH8Q9H579 483 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 CCDC39Q9UFE4 941 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 IVNS1ABPQ9Y6Y0 642 aa9.02□□□□□ -0.97
USP4-207ENST00000462673 FOXN1O15353 648 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 DHX16O60231 1041 aaKnown RBP9.01□□□□□ -0.97
USP4-207ENST00000462673 CASTP20810 708 aaKnown RBP9.01□□□□□ -0.97
USP4-207ENST00000462673 SMARCA1P28370 1054 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 RCAN1P53805 252 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 LACTBP83111 547 aaPredicted RBP9.01□□□□□ -0.97
USP4-207ENST00000462673 SHROOM1Q2M3G4 852 aaPredicted RBP9.01□□□□□ -0.97
USP4-207ENST00000462673 MB21D2Q8IYB1 491 aaPredicted RBP9.01□□□□□ -0.97
USP4-207ENST00000462673 ZNF296Q8WUU4 475 aaPredicted RBP9.01□□□□□ -0.97
USP4-207ENST00000462673 KIFC2Q96AC6 838 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 PDLIM2Q96JY6 352 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 KIF2CQ99661 725 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 MAF1Q9H063 256 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 EFCC1Q9HA90 598 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 RBM28Q9NW13 759 aaKnown RBP9.01□□□□□ -0.97
USP4-207ENST00000462673 MORF4L1Q9UBU8 362 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 FBXO40Q9UH90 709 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 CPA4Q9UI42 421 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 PPP1R9AQ9ULJ8 1098 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 SNX14Q9Y5W7 946 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 SIPA1L1O43166 1804 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 ATAD5Q96QE3 1844 aa9.01□□□□□ -0.97
USP4-207ENST00000462673 VWA5AO00534 786 aa9□□□□□ -0.97
USP4-207ENST00000462673 DYNC1I1O14576 645 aa9□□□□□ -0.97
USP4-207ENST00000462673 DDAH1O94760 285 aa9□□□□□ -0.97
USP4-207ENST00000462673 MBD3O95983 291 aa9□□□□□ -0.97
USP4-207ENST00000462673 HSPA8P11142 646 aaKnown RBP9□□□□□ -0.97
USP4-207ENST00000462673 PDHBP11177 359 aa9□□□□□ -0.97
USP4-207ENST00000462673 RPS6KB1P23443 525 aa9□□□□□ -0.97
USP4-207ENST00000462673 STAT3P40763 770 aa9□□□□□ -0.97
USP4-207ENST00000462673 ERVK-9P63128 1117 aa9□□□□□ -0.97
USP4-207ENST00000462673 ERVK-24P63145 666 aa9□□□□□ -0.97
USP4-207ENST00000462673 EXOSC10Q01780 885 aaKnown RBP9□□□□□ -0.97
USP4-207ENST00000462673 ZNF543Q08ER8 600 aa9□□□□□ -0.97
USP4-207ENST00000462673 PLS1Q14651 629 aa9□□□□□ -0.97
USP4-207ENST00000462673 SEC23AQ15436 765 aa9□□□□□ -0.97
USP4-207ENST00000462673 TKFCQ3LXA3 575 aa9□□□□□ -0.97
USP4-207ENST00000462673 ZSCAN23Q3MJ62 389 aa9□□□□□ -0.97
USP4-207ENST00000462673 CPLX2Q6PUV4 134 aaKnown RBP9□□□□□ -0.97
USP4-207ENST00000462673 SAMD1Q6SPF0 538 aaPredicted RBP9□□□□□ -0.97
USP4-207ENST00000462673 BTNL9Q6UXG8 535 aa9□□□□□ -0.97
USP4-207ENST00000462673 CYB5R4Q7L1T6 521 aa9□□□□□ -0.97
USP4-207ENST00000462673 CHST3Q7LGC8 479 aa9□□□□□ -0.97
USP4-207ENST00000462673 NBPF11Q86T75 865 aa9□□□□□ -0.97
USP4-207ENST00000462673 SGMS1Q86VZ5 419 aa9□□□□□ -0.97
USP4-207ENST00000462673 TRMT44Q8IYL2 757 aaKnown RBP9□□□□□ -0.97
USP4-207ENST00000462673 SHCBP1Q8NEM2 672 aa9□□□□□ -0.97
USP4-207ENST00000462673 NUP133Q8WUM0 1156 aa9□□□□□ -0.97
USP4-207ENST00000462673 PAGR1Q9BTK6 254 aa9□□□□□ -0.97
USP4-207ENST00000462673 ZSWIM6Q9HCJ5 1215 aa9□□□□□ -0.97
USP4-207ENST00000462673 RBPJLQ9UBG7 517 aa9□□□□□ -0.97
USP4-207ENST00000462673 ADAMTS5Q9UNA0 930 aa9□□□□□ -0.97
USP4-207ENST00000462673 MTMR7Q9Y216 660 aa9□□□□□ -0.97
USP4-207ENST00000462673 OTOFQ9HC10 1997 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms