RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 COL15A1P39059 1388 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 ARFGEF1Q9Y6D6 1849 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 WDR90Q96KV7 1748 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 POLRMTO00411 1230 aaKnown RBP9.66□□□□□ -0.86
USP54-208ENST00000461520 GADD45BO75293 160 aaPredicted RBP9.66□□□□□ -0.86
USP54-208ENST00000461520 ECEL1O95672 775 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 STARD3NLO95772 234 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 KCNA3P22001 575 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 POU4F3Q15319 338 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 ZNF790Q6PG37 636 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 ARHGAP27Q6ZUM4 889 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 IL17REQ8NFR9 667 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 SHKBP1Q8TBC3 707 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 DMRTB1Q96MA1 342 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 CSRNP1Q96S65 589 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 TEX13AQ9BXU3 409 aaPredicted RBP9.66□□□□□ -0.86
USP54-208ENST00000461520 GNEQ9Y223 722 aaKnown RBP9.66□□□□□ -0.86
USP54-208ENST00000461520 ZBTB1Q9Y2K1 713 aa9.66□□□□□ -0.86
USP54-208ENST00000461520 CEMIPQ8WUJ3 1361 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 PRR19A6NJB7 356 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 TOMM70O94826 608 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 BRD1O95696 1058 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 B3GALT4O96024 378 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 CYP11A1P05108 521 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 ITPKAP23677 461 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 PPP2R1AP30153 589 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 PRKAR2BP31323 418 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 SOX4Q06945 474 aaPredicted RBP9.65□□□□□ -0.86
USP54-208ENST00000461520 CDPF1Q6NVV7 123 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 TMC7Q7Z402 723 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 FBLIM1Q8WUP2 373 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 PHACTR3Q96KR7 559 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 MFSD14AQ96MC6 490 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 TRIM56Q9BRZ2 755 aaKnown RBP9.65□□□□□ -0.86
USP54-208ENST00000461520 ABCB6Q9NP58 842 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 NMRK2Q9NPI5 230 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 PIM2Q9P1W9 311 aa9.65□□□□□ -0.86
USP54-208ENST00000461520 HEG1Q9ULI3 1381 aa9.64□□□□□ -0.87
USP54-208ENST00000461520 A0A087WZG4 1122 aa9.64□□□□□ -0.87
USP54-208ENST00000461520 COBLO75128 1261 aa9.64□□□□□ -0.87
USP54-208ENST00000461520 USP11P51784 963 aa9.64□□□□□ -0.87
USP54-208ENST00000461520 C2CD4AQ8NCU7 369 aaPredicted RBP9.64□□□□□ -0.87
USP54-208ENST00000461520 ALKBH8Q96BT7 664 aaKnown RBP9.64□□□□□ -0.87
USP54-208ENST00000461520 ZNF496Q96IT1 587 aaPredicted RBP9.64□□□□□ -0.87
USP54-208ENST00000461520 UBR2Q8IWV8 1755 aa9.64□□□□□ -0.87
USP54-208ENST00000461520 VIRMAQ69YN4 1812 aaKnown RBP9.63□□□□□ -0.87
USP54-208ENST00000461520 TMEM238LA0A1B0GVL6 79 aa9.63□□□□□ -0.87
USP54-208ENST00000461520 BTBD11A6QL63 1104 aa9.63□□□□□ -0.87
USP54-208ENST00000461520 WDR64B1ANS9 1081 aa9.63□□□□□ -0.87
USP54-208ENST00000461520 EIF4EBP3O60516 100 aaPredicted RBP9.63□□□□□ -0.87
USP54-208ENST00000461520 U2AF1L5P0DN76 240 aaPredicted RBP9.63□□□□□ -0.87
USP54-208ENST00000461520 CANXP27824 592 aaKnown RBP9.63□□□□□ -0.87
USP54-208ENST00000461520 ZNF157P51786 506 aaPredicted RBP9.63□□□□□ -0.87
USP54-208ENST00000461520 EIF5P55010 431 aaKnown RBP9.63□□□□□ -0.87
USP54-208ENST00000461520 U2AF1Q01081 240 aaKnown RBP eCLIP9.63□□□□□ -0.87
USP54-208ENST00000461520 GRM2Q14416 872 aa9.63□□□□□ -0.87
USP54-208ENST00000461520 NFIXQ14938 502 aa9.63□□□□□ -0.87
USP54-208ENST00000461520 DALRD3Q5D0E6 543 aaKnown RBP9.63□□□□□ -0.87
USP54-208ENST00000461520 PI16Q6UXB8 463 aa9.63□□□□□ -0.87
USP54-208ENST00000461520 DNAJC5GQ8N7S2 189 aa9.63□□□□□ -0.87
USP54-208ENST00000461520 FMNL2Q96PY5 1086 aa9.63□□□□□ -0.87
USP54-208ENST00000461520 SERPINB2P05120 415 aa9.62□□□□□ -0.87
USP54-208ENST00000461520 IL6STP40189 918 aaPredicted RBP9.62□□□□□ -0.87
USP54-208ENST00000461520 HTRA3P83110 453 aa9.62□□□□□ -0.87
USP54-208ENST00000461520 NFKBIBQ15653 356 aa9.62□□□□□ -0.87
USP54-208ENST00000461520 C9orf131Q5VYM1 1079 aa9.62□□□□□ -0.87
USP54-208ENST00000461520 C16orf71Q8IYS4 520 aaPredicted RBP9.62□□□□□ -0.87
USP54-208ENST00000461520 SHISA5Q8N114 240 aa9.62□□□□□ -0.87
USP54-208ENST00000461520 FBXL6Q8N531 539 aa9.62□□□□□ -0.87
USP54-208ENST00000461520 GLIS3Q8NEA6 775 aa9.62□□□□□ -0.87
USP54-208ENST00000461520 RTF1Q92541 710 aaKnown RBP9.62□□□□□ -0.87
USP54-208ENST00000461520 CORO1BQ9BR76 489 aa9.62□□□□□ -0.87
USP54-208ENST00000461520 DCTN4Q9UJW0 460 aa9.62□□□□□ -0.87
USP54-208ENST00000461520 SIPA1L3O60292 1781 aaPredicted RBP9.61□□□□□ -0.87
USP54-208ENST00000461520 FAM95CA0A1B0GW59 222 aa9.61□□□□□ -0.87
USP54-208ENST00000461520 HTATSF1O43719 755 aaKnown RBP9.61□□□□□ -0.87
USP54-208ENST00000461520 ADH5P11766 374 aa9.61□□□□□ -0.87
USP54-208ENST00000461520 CHRNA5P30532 468 aa9.61□□□□□ -0.87
USP54-208ENST00000461520 PRPF40BQ6NWY9 871 aaKnown RBP9.61□□□□□ -0.87
USP54-208ENST00000461520 NPM2Q86SE8 214 aaKnown RBP9.61□□□□□ -0.87
USP54-208ENST00000461520 SBF1O95248 1867 aa9.61□□□□□ -0.87
USP54-208ENST00000461520 NRXN2Q9P2S2 1712 aa9.6□□□□□ -0.87
USP54-208ENST00000461520 PTPN12Q05209 780 aaKnown RBP9.6□□□□□ -0.87
USP54-208ENST00000461520 FAAP100Q0VG06 881 aa9.6□□□□□ -0.87
USP54-208ENST00000461520 RAD18Q9NS91 495 aa9.6□□□□□ -0.87
USP54-208ENST00000461520 ACTL7BQ9Y614 415 aa9.6□□□□□ -0.87
USP54-208ENST00000461520 TNRC6CQ9HCJ0 1690 aaKnown RBP9.6□□□□□ -0.87
USP54-208ENST00000461520 KIAA1324LA8MWY0 1029 aaPredicted RBP9.59□□□□□ -0.87
USP54-208ENST00000461520 KCNQ3O43525 872 aa9.59□□□□□ -0.87
USP54-208ENST00000461520 A1BGP04217 495 aa9.59□□□□□ -0.87
USP54-208ENST00000461520 F13BP05160 661 aa9.59□□□□□ -0.87
USP54-208ENST00000461520 NEFMP07197 916 aa9.59□□□□□ -0.87
USP54-208ENST00000461520 MAPK1P28482 360 aa9.59□□□□□ -0.87
USP54-208ENST00000461520 TBC1D9BQ66K14 1250 aa9.59□□□□□ -0.87
USP54-208ENST00000461520 PAOXQ6QHF9 649 aa9.59□□□□□ -0.87
USP54-208ENST00000461520 MCM10Q7L590 875 aa9.59□□□□□ -0.87
USP54-208ENST00000461520 DYMQ7RTS9 669 aa9.59□□□□□ -0.87
USP54-208ENST00000461520 RNF181Q9P0P0 153 aa9.59□□□□□ -0.87
USP54-208ENST00000461520 KDM2BQ8NHM5 1336 aa9.58□□□□□ -0.88
USP54-208ENST00000461520 H0YIN7 160 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms