RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	WDR46	O15213	610 aa	Known RBP	10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	GNAT2	P19087	354 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	MAP2K5	Q13163	448 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	HDAC1	Q13547	482 aa	Predicted RBP	10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	COG2	Q14746	738 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	SBK1	Q52WX2	424 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	ZMYM1	Q5SVZ6	1142 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	FAM83B	Q5T0W9	1011 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	GIMAP6	Q6P9H5	292 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	IFNL3	Q8IZI9	196 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	DIS3L	Q8TF46	1054 aa	Known RBP	10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	LPAR1	Q92633	364 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	CHMP4C	Q96CF2	233 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	GCC1	Q96CN9	775 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	PAWR	Q96IZ0	340 aa	Known RBP	10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	NUP88	Q99567	741 aa	Predicted RBP	10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	APBA2	Q99767	749 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	MOV10L1	Q9BXT6	1211 aa	Known RBP	10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	SLC4A5	Q9BY07	1137 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	IRX2	Q9BZI1	471 aa	Predicted RBP	10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	NACAP1	Q9BZK3	213 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	NAPB	Q9H115	298 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	KANSL2	Q9H9L4	492 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	GOPC	Q9HD26	462 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	FBXO28	Q9NVF7	368 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	ISY1	Q9ULR0	285 aa	Known RBP	10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	ROBO3	Q96MS0	1386 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	TRIM6-TRIM34	B2RNG4	842 aa		10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	PATL2	C9JE40	543 aa	Known RBP	10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	PTPRE	P23469	700 aa		10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	CCND3	P30281	292 aa	Predicted RBP	10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	PDE1A	P54750	535 aa		10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	CACNB2	Q08289	660 aa	Predicted RBP	10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	LBX2	Q6XYB7	198 aa		10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	THSD4	Q6ZMP0	1018 aa		10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	NCAPG2	Q86XI2	1143 aa		10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	ZNF444	Q8N0Y2	327 aa	Predicted RBP	10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	USP6NL	Q92738	828 aa		10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	HTATIP2	Q9BUP3	242 aa		10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	SPATC1L	Q9H0A9	340 aa		10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	HOXC10	Q9NYD6	342 aa		10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	FLRT1	Q9NZU1	646 aa		10.34	□□□□□ -0.75
RFX3-209	ENST00000451859	SLC15A5	A6NIM6	579 aa		10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	XRCC5	P13010	732 aa	Known RBP	10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	ERCC3	P19447	782 aa		10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	SLC4A3	P48751	1232 aa		10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	IRX6	P78412	446 aa	Predicted RBP	10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	CTDSPL2	Q05D32	466 aa		10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	PPARA	Q07869	468 aa		10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	FAM47A	Q5JRC9	791 aa		10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	VPS53	Q5VIR6	699 aa		10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	UBE2Q1	Q7Z7E8	422 aa		10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	LRRC47	Q8N1G4	583 aa	Known RBP	10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	NPLOC4	Q8TAT6	608 aa		10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	RILPL2	Q969X0	211 aa		10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	EVI5L	Q96CN4	794 aa		10.33	□□□□□ -0.76
RFX3-209	ENST00000451859	CLIP2	Q9UDT6	1046 aa		10.33	□□□□□ -0.76
RFX3-209	ENST00000451859		A0A0D9SFI3	127 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	IGHD	P01880	384 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	SLC3A2	P08195	630 aa	Known RBP	10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	TSPY3	P0CV98	308 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	TSPY8	P0CW00	308 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	ADORA2A	P29274	412 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	CNGA1	P29973	690 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	CYP2C19	P33261	490 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	PDE4B	Q07343	736 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	GRB14	Q14449	540 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	MAP3K21	Q5TCX8	1036 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	MFSD14C	Q5VZR4	134 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	NECAB2	Q7Z6G3	386 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	DPP9	Q86TI2	863 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	TRMT44	Q8IYL2	757 aa	Known RBP	10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	MB21D1	Q8N884	522 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	CEP95	Q96GE4	821 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	FAM227B	Q96M60	508 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	CRISPLD2	Q9H0B8	497 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	RWDD1	Q9H446	243 aa	Predicted RBP	10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	ZNF287	Q9HBT7	754 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	STAP2	Q9UGK3	403 aa		10.32	□□□□□ -0.76
RFX3-209	ENST00000451859	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.32	□□□□□ -0.76
RFX3-209	ENST00000451859		F5H6K3	240 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	FOXP2	O15409	715 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	EVI5	O60447	810 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	NDUFB10	O96000	172 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	TFAP4	Q01664	338 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	KLRC3	Q07444	240 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	NMI	Q13287	307 aa	Predicted RBP	10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	TMEM132B	Q14DG7	1078 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	ANO1	Q5XXA6	986 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	C7orf61	Q8IZ16	206 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	OXER1	Q8TDS5	423 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	INCENP	Q9NQS7	918 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	TOMM22	Q9NS69	142 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	NYAP2	Q9P242	653 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	PPP1R9A	Q9ULJ8	1098 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	MTMR7	Q9Y216	660 aa		10.31	□□□□□ -0.76
RFX3-209	ENST00000451859	IGKV6D-41	A0A0C4DH26	115 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	VWA5A	O00534	786 aa		10.3	□□□□□ -0.76
RFX3-209	ENST00000451859	RANBP6	O60518	1105 aa	Known RBP	10.3	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms