RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 KIAA1468Q9P260 1216 aa11.9□□□□□ -0.5
SYNE2-206ENST00000441438 ZNF112Q9UJU3 913 aa11.9□□□□□ -0.5
SYNE2-206ENST00000441438 ABCA3Q99758 1704 aa11.9□□□□□ -0.5
SYNE2-206ENST00000441438 K7ENM7 598 aa11.9□□□□□ -0.51
SYNE2-206ENST00000441438 KIF2AO00139 706 aaPredicted RBP11.9□□□□□ -0.51
SYNE2-206ENST00000441438 CAPN3P20807 821 aa11.9□□□□□ -0.51
SYNE2-206ENST00000441438 CYP4A11Q02928 519 aa11.9□□□□□ -0.51
SYNE2-206ENST00000441438 TTC19Q6DKK2 380 aaPredicted RBP11.9□□□□□ -0.51
SYNE2-206ENST00000441438 KRT222Q8N1A0 295 aa11.9□□□□□ -0.51
SYNE2-206ENST00000441438 RSPH14Q9UHP6 348 aa11.9□□□□□ -0.51
SYNE2-206ENST00000441438 TMEM94Q12767 1356 aa11.9□□□□□ -0.51
SYNE2-206ENST00000441438 DPYSL4O14531 572 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 KPNA6O60684 536 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 ATP6V1AP38606 617 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 CENPAP49450 140 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 TNIP2Q8NFZ5 429 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 KCTD10Q9H3F6 313 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 PANK3Q9H999 370 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 KRT82Q9NSB4 513 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 GIMAP2Q9UG22 337 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 LAMP5Q9UJQ1 280 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 AFG3L2Q9Y4W6 797 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 TULP4Q9NRJ4 1543 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 TIPRLO75663 272 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 CNGA1P29973 690 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 KRT20P35900 424 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 ARHGAP4P98171 946 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 HIC1Q14526 733 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 POSTNQ15063 836 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 PLCB4Q15147 1175 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 ERFEQ4G0M1 354 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 TTLL5Q6EMB2 1281 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 OTOP3Q7RTS5 596 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 RGL4Q8IZJ4 473 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 SPATA18Q8TC71 538 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 CRACR2AQ9BSW2 395 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 ALS2Q96Q42 1657 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 KDM2BQ8NHM5 1336 aa11.89□□□□□ -0.51
SYNE2-206ENST00000441438 APBB3O95704 486 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 DDIT3P35638 169 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 TMF1P82094 1093 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 CCDC173Q0VFZ6 552 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 SP140Q13342 867 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 TNIP1Q15025 636 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 CNGA3Q16281 694 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 TTC39AQ5SRH9 613 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 NLRP14Q86W24 1093 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 LUC7L2Q9Y383 392 aaKnown RBP11.88□□□□□ -0.51
SYNE2-206ENST00000441438 COL16A1Q07092 1604 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-206ENST00000441438 NINLQ9Y2I6 1382 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 RASGRP1O95267 797 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 CD9P21926 228 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 DEUP1Q05D60 604 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 LINC00469Q8N7U9 141 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 DISC1Q9NRI5 854 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 ANKRD26Q9UPS8 1709 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 BTBD11A6QL63 1104 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 SORBS3O60504 671 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 HSPA1LP34931 641 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 PDE6CP51160 858 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 GTF2A2P52657 109 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 TPD52P55327 224 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-206ENST00000441438 PLIN5Q00G26 463 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 STK3Q13188 491 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 GLYCTKQ8IVS8 523 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 C7orf61Q8IZ16 206 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 TAB3Q8N5C8 712 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-206ENST00000441438 CLP1Q92989 425 aaKnown RBP11.88□□□□□ -0.51
SYNE2-206ENST00000441438 L3MBTL3Q96JM7 780 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-206ENST00000441438 DEPDC7Q96QD5 511 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 SLC13A1Q9BZW2 595 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 PLCB1Q9NQ66 1216 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 DDX21Q9NR30 783 aaKnown RBP eCLIP11.88□□□□□ -0.51
SYNE2-206ENST00000441438 EPS15L1Q9UBC2 864 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 VTI1BQ9UEU0 232 aa11.88□□□□□ -0.51
SYNE2-206ENST00000441438 EPN1Q9Y6I3 576 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-206ENST00000441438 VIRMAQ69YN4 1812 aaKnown RBP11.87□□□□□ -0.51
SYNE2-206ENST00000441438 CYP17A1P05093 508 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 TMOD1P28289 359 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 AP2B1P63010 937 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 MLC1Q15049 377 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 CCDC152Q4G0S7 254 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 CRTC2Q53ET0 693 aaPredicted RBP11.87□□□□□ -0.51
SYNE2-206ENST00000441438 TRIM22Q8IYM9 498 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 ZNF408Q9H9D4 720 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 NCOA5Q9HCD5 579 aaKnown RBP11.87□□□□□ -0.51
SYNE2-206ENST00000441438 STARD7Q9NQZ5 370 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 J3KRW8 73 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 SOCS7O14512 581 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 KATNA1O75449 491 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 KRT13P13646 458 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 BCAMP50895 628 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 KRT26Q7Z3Y9 468 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 GOLGA6L1Q8N7Z2 621 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 ASPSCR1Q9BZE9 553 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 ANKEF1Q9NU02 776 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 FAM184BQ9ULE4 1060 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 DISP3Q9P2K9 1392 aa11.87□□□□□ -0.51
SYNE2-206ENST00000441438 BLMP54132 1417 aaPredicted RBP11.86□□□□□ -0.51
SYNE2-206ENST00000441438 NWD2Q9ULI1 1742 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms