RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 ELNP15502 786 aa21.89■■□□□ 1.09
SHH-204ENST00000441114 GRK4P32298 578 aa21.89■■□□□ 1.09
SHH-204ENST00000441114 SLC16A2P36021 539 aa21.89■■□□□ 1.09
SHH-204ENST00000441114 STAT3P40763 770 aa21.89■■□□□ 1.09
SHH-204ENST00000441114 SNAP25P60880 206 aa21.89■■□□□ 1.09
SHH-204ENST00000441114 IFIT1BQ5T764 474 aaKnown RBP21.89■■□□□ 1.09
SHH-204ENST00000441114 RNF20Q5VTR2 975 aa21.89■■□□□ 1.09
SHH-204ENST00000441114 REPS2Q8NFH8 660 aa21.89■■□□□ 1.09
SHH-204ENST00000441114 RAVER2Q9HCJ3 691 aaKnown RBP21.89■■□□□ 1.09
SHH-204ENST00000441114 ERICH2A1L162 156 aa21.88■■□□□ 1.09
SHH-204ENST00000441114 ANKS1AQ92625 1134 aa21.88■■□□□ 1.09
SHH-204ENST00000441114 ZNFX1Q9P2E3 1918 aaKnown RBP21.87■■□□□ 1.09
SHH-204ENST00000441114 GOLGA8HP0CJ92 632 aa21.87■■□□□ 1.09
SHH-204ENST00000441114 PTPREP23469 700 aa21.87■■□□□ 1.09
SHH-204ENST00000441114 IRF5Q13568 498 aa21.87■■□□□ 1.09
SHH-204ENST00000441114 SEC23AQ15436 765 aa21.87■■□□□ 1.09
SHH-204ENST00000441114 SNRNP48Q6IEG0 339 aaKnown RBP21.87■■□□□ 1.09
SHH-204ENST00000441114 MB21D2Q8IYB1 491 aaPredicted RBP21.87■■□□□ 1.09
SHH-204ENST00000441114 SHCBP1Q8NEM2 672 aa21.87■■□□□ 1.09
SHH-204ENST00000441114 SOCS4Q8WXH5 440 aa21.87■■□□□ 1.09
SHH-204ENST00000441114 MROH8Q9H579 483 aa21.87■■□□□ 1.09
SHH-204ENST00000441114 ZNF214Q9UL59 606 aaPredicted RBP21.87■■□□□ 1.09
SHH-204ENST00000441114 PRR12Q9ULL5 1215 aa21.87■■□□□ 1.09
SHH-204ENST00000441114 SLC25A27O95847 323 aa21.86■■□□□ 1.09
SHH-204ENST00000441114 SOX10P56693 466 aa21.86■■□□□ 1.09
SHH-204ENST00000441114 ANTXR2P58335 489 aa21.86■■□□□ 1.09
SHH-204ENST00000441114 ZNF543Q08ER8 600 aa21.86■■□□□ 1.09
SHH-204ENST00000441114 WTAPQ15007 396 aa21.86■■□□□ 1.09
SHH-204ENST00000441114 SART3Q15020 963 aaKnown RBP21.86■■□□□ 1.09
SHH-204ENST00000441114 TMEM67Q5HYA8 995 aa21.86■■□□□ 1.09
SHH-204ENST00000441114 MORN1Q5T089 497 aa21.86■■□□□ 1.09
SHH-204ENST00000441114 CCDC174Q6PII3 467 aa21.86■■□□□ 1.09
SHH-204ENST00000441114 RIOX2Q8IUF8 465 aa21.86■■□□□ 1.09
SHH-204ENST00000441114 SLAIN1Q8ND83 568 aa21.86■■□□□ 1.09
SHH-204ENST00000441114 ARMC5Q96C12 935 aa21.86■■□□□ 1.09
SHH-204ENST00000441114 SLC38A10Q9HBR0 1119 aa21.86■■□□□ 1.09
SHH-204ENST00000441114 SLC15A5A6NIM6 579 aa21.85■■□□□ 1.09
SHH-204ENST00000441114 PRC1O43663 620 aa21.85■■□□□ 1.09
SHH-204ENST00000441114 PLA2G6O60733 806 aa21.85■■□□□ 1.09
SHH-204ENST00000441114 REC8O95072 547 aa21.85■■□□□ 1.09
SHH-204ENST00000441114 RGS2P41220 211 aa21.85■■□□□ 1.09
SHH-204ENST00000441114 ZNF333Q96JL9 665 aa21.85■■□□□ 1.09
SHH-204ENST00000441114 TEX13BQ9BXU2 312 aa21.85■■□□□ 1.09
SHH-204ENST00000441114 SENP2Q9HC62 589 aa21.85■■□□□ 1.09
SHH-204ENST00000441114 RIPK3Q9Y572 518 aa21.85■■□□□ 1.09
SHH-204ENST00000441114 SNHG28P0DPA3 235 aa21.84■■□□□ 1.09
SHH-204ENST00000441114 ZKSCAN1P17029 563 aaPredicted RBP21.84■■□□□ 1.09
SHH-204ENST00000441114 MCM5P33992 734 aa21.84■■□□□ 1.09
SHH-204ENST00000441114 MAP2K5Q13163 448 aa21.84■■□□□ 1.09
SHH-204ENST00000441114 COL9A3Q14050 684 aaPredicted RBP21.84■■□□□ 1.09
SHH-204ENST00000441114 SYDE2Q5VT97 1194 aa21.84■■□□□ 1.09
SHH-204ENST00000441114 RASEFQ8IZ41 740 aa21.84■■□□□ 1.09
SHH-204ENST00000441114 UBA5Q9GZZ9 404 aa21.84■■□□□ 1.09
SHH-204ENST00000441114 CPVLQ9H3G5 476 aa21.84■■□□□ 1.09
SHH-204ENST00000441114 FDX1P10109 184 aa21.83■■□□□ 1.09
SHH-204ENST00000441114 UBXN2AP68543 259 aa21.83■■□□□ 1.09
SHH-204ENST00000441114 GRB14Q14449 540 aa21.83■■□□□ 1.09
SHH-204ENST00000441114 DPP9Q86TI2 863 aa21.83■■□□□ 1.09
SHH-204ENST00000441114 PXYLP1Q8TE99 480 aa21.83■■□□□ 1.09
SHH-204ENST00000441114 USP6NLQ92738 828 aa21.83■■□□□ 1.09
SHH-204ENST00000441114 AGBL1Q96MI9 1066 aa21.83■■□□□ 1.09
SHH-204ENST00000441114 NEK1Q96PY6 1258 aa21.83■■□□□ 1.09
SHH-204ENST00000441114 MMP19Q99542 508 aa21.83■■□□□ 1.09
SHH-204ENST00000441114 GPHNQ9NQX3 736 aaPredicted RBP21.83■■□□□ 1.09
SHH-204ENST00000441114 HOMER2Q9NSB8 354 aa21.83■■□□□ 1.09
SHH-204ENST00000441114 STRNO43815 780 aa21.82■■□□□ 1.08
SHH-204ENST00000441114 INHAP05111 366 aa21.82■■□□□ 1.08
SHH-204ENST00000441114 PARP1P09874 1014 aaKnown RBP21.82■■□□□ 1.08
SHH-204ENST00000441114 FCER1AP12319 257 aa21.82■■□□□ 1.08
SHH-204ENST00000441114 ADORA2AP29274 412 aa21.82■■□□□ 1.08
SHH-204ENST00000441114 MTFR1Q15390 333 aa21.82■■□□□ 1.08
SHH-204ENST00000441114 CCL14Q16627 93 aa21.82■■□□□ 1.08
SHH-204ENST00000441114 ADCK5Q3MIX3 580 aa21.82■■□□□ 1.08
SHH-204ENST00000441114 GPATCH4Q5T3I0 446 aaKnown RBP21.82■■□□□ 1.08
SHH-204ENST00000441114 BTNL9Q6UXG8 535 aa21.82■■□□□ 1.08
SHH-204ENST00000441114 IGDCC4Q8TDY8 1250 aa21.82■■□□□ 1.08
SHH-204ENST00000441114 TRIB2Q92519 343 aa21.82■■□□□ 1.08
SHH-204ENST00000441114 LRRC2Q9BYS8 371 aa21.82■■□□□ 1.08
SHH-204ENST00000441114 ATP2A1O14983 1001 aa21.81■■□□□ 1.08
SHH-204ENST00000441114 COPB2P35606 906 aa21.81■■□□□ 1.08
SHH-204ENST00000441114 OAZ1P54368 228 aa21.81■■□□□ 1.08
SHH-204ENST00000441114 TRIM32Q13049 653 aa21.81■■□□□ 1.08
SHH-204ENST00000441114 NPLOC4Q8TAT6 608 aa21.81■■□□□ 1.08
SHH-204ENST00000441114 APBA2Q99767 749 aa21.81■■□□□ 1.08
SHH-204ENST00000441114 TMEM106CQ9BVX2 250 aa21.81■■□□□ 1.08
SHH-204ENST00000441114 ZNF536O15090 1300 aa21.8■■□□□ 1.08
SHH-204ENST00000441114 PLXNA1Q9UIW2 1896 aa21.8■■□□□ 1.08
SHH-204ENST00000441114 DHX16O60231 1041 aaKnown RBP21.8■■□□□ 1.08
SHH-204ENST00000441114 XRCC5P13010 732 aaKnown RBP21.8■■□□□ 1.08
SHH-204ENST00000441114 ALAS1P13196 640 aa21.8■■□□□ 1.08
SHH-204ENST00000441114 TAL1P17542 331 aaPredicted RBP21.8■■□□□ 1.08
SHH-204ENST00000441114 HSPA4P34932 840 aa21.8■■□□□ 1.08
SHH-204ENST00000441114 KRT32Q14532 448 aa21.8■■□□□ 1.08
SHH-204ENST00000441114 KCTD2Q14681 263 aa21.8■■□□□ 1.08
SHH-204ENST00000441114 ASPRV1Q53RT3 343 aa21.8■■□□□ 1.08
SHH-204ENST00000441114 NFXL1Q6ZNB6 911 aa21.8■■□□□ 1.08
SHH-204ENST00000441114 VAT1LQ9HCJ6 419 aa21.8■■□□□ 1.08
SHH-204ENST00000441114 SMCHD1A6NHR9 2005 aa21.8■■□□□ 1.08
SHH-204ENST00000441114 ZNF236Q9UL36 1845 aa21.8■■□□□ 1.08
SHH-204ENST00000441114 COBLO75128 1261 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms